Analysis of interatomic Contacts of Structural Units in PDB entry:
9O4F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O4F entry

There are 6 chains in PDB entry 9O4F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 100	VAL 459
B	ASN 100	VAL 459
C	ASN 100	VAL 459
D	PHE 466	GLY 620
E	PHE 466	GLY 620
F	PHE 466	GLY 620

There are 37 helices in PDB entry 9O4F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	144	148	Right-handed 310
Helix 2	AA2	A	292	297	Right-handed alpha
Helix 3	AA3	A	338	345	Right-handed alpha
Helix 4	AA4	A	447	458	Right-handed alpha
Helix 5	AA5	B	144	148	Right-handed 310
Helix 6	AA6	B	292	297	Right-handed alpha
Helix 7	AA7	B	338	345	Right-handed alpha
Helix 8	AA8	B	447	458	Right-handed alpha
Helix 9	AA9	C	144	148	Right-handed 310
Helix 10	AB1	C	292	297	Right-handed alpha
Helix 11	AB2	C	338	345	Right-handed alpha
Helix 12	AB3	C	447	458	Right-handed alpha
Helix 13	AB4	D	476	494	Right-handed alpha
Helix 14	AB5	D	498	512	Right-handed alpha
Helix 15	AB6	D	519	524	Right-handed alpha
Helix 16	AB7	D	529	549	Right-handed alpha
Helix 17	AB8	D	571	580	Right-handed alpha
Helix 18	AB9	D	589	601	Right-handed alpha
Helix 19	AC1	D	602	607	Right-handed alpha
Helix 20	AC2	D	610	618	Right-handed alpha
Helix 21	AC3	E	476	492	Right-handed alpha
Helix 22	AC4	E	498	512	Right-handed alpha
Helix 23	AC5	E	519	524	Right-handed alpha
Helix 24	AC6	E	529	549	Right-handed alpha
Helix 25	AC7	E	571	581	Right-handed alpha
Helix 26	AC8	E	589	601	Right-handed alpha
Helix 27	AC9	E	602	607	Right-handed alpha
Helix 28	AD1	E	610	618	Right-handed alpha
Helix 29	AD2	F	476	484	Right-handed alpha
Helix 30	AD3	F	484	494	Right-handed alpha
Helix 31	AD4	F	498	512	Right-handed alpha
Helix 32	AD5	F	519	524	Right-handed alpha
Helix 33	AD6	F	529	549	Right-handed alpha
Helix 34	AD7	F	571	580	Right-handed alpha
Helix 35	AD8	F	589	601	Right-handed alpha
Helix 36	AD9	F	602	607	Right-handed alpha
Helix 37	AE1	F	610	618	Right-handed alpha

There are 24 sheets in PDB entry 9O4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	497	first strand
Strand 2	A	433	439	parallel
Strand 3	A	101	107	anti-parallel
Strand 4	D	559	564	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	423	429	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	402	411	anti-parallel
Strand 5	A	164	165	first strand

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	157	first strand
Strand 2	A	402	411	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	395	397	first strand

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	381	382	anti-parallel
Strand 3	A	413	414	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	184	first strand
Strand 2	A	190	202	anti-parallel
Strand 3	A	349	361	anti-parallel
Strand 4	A	364	377	anti-parallel
Strand 5	A	303	309	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	213	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	251	257	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	325	329	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	314	316	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	496	497	first strand
Strand 2	B	433	439	parallel
Strand 3	B	101	107	anti-parallel
Strand 4	E	559	564	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	423	429	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	402	411	anti-parallel
Strand 5	B	164	165	first strand

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	157	first strand
Strand 2	B	402	411	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	395	397	first strand

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	381	382	anti-parallel
Strand 3	B	413	414	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	184	first strand
Strand 2	B	190	202	anti-parallel
Strand 3	B	349	361	anti-parallel
Strand 4	B	364	377	anti-parallel
Strand 5	B	303	309	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	213	214	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	251	257	anti-parallel
Strand 3	B	260	264	anti-parallel
Strand 4	B	325	329	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	314	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	496	497	first strand
Strand 2	C	433	439	parallel
Strand 3	C	101	107	anti-parallel
Strand 4	F	559	564	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	423	429	anti-parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	402	411	anti-parallel
Strand 5	C	164	165	first strand

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	157	first strand
Strand 2	C	402	411	anti-parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	423	429	anti-parallel
Strand 5	C	395	397	first strand

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	381	382	anti-parallel
Strand 3	C	413	414	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	184	first strand
Strand 2	C	190	202	anti-parallel
Strand 3	C	349	361	anti-parallel
Strand 4	C	364	377	anti-parallel
Strand 5	C	303	309	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	213	214	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	251	257	anti-parallel
Strand 3	C	260	264	anti-parallel
Strand 4	C	325	329	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	314	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O4F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O4F