Analysis of interatomic Contacts of Structural Units in PDB entry:
9O4G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O4G entry

There are 2 chains in PDB entry 9O4G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 170	LEU 873
B	VAL 104	PHE 767

There are 54 helices in PDB entry 9O4G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	187	192	Right-handed alpha
Helix 2	AA2	A	235	251	Right-handed alpha
Helix 3	AA3	A	267	276	Right-handed alpha
Helix 4	AA4	A	293	297	Right-handed 310
Helix 5	AA5	A	319	326	Right-handed alpha
Helix 6	AA6	A	328	333	Right-handed alpha
Helix 7	AA7	A	340	353	Right-handed alpha
Helix 8	AA8	A	362	366	Right-handed alpha
Helix 9	AA9	A	372	376	Right-handed 310
Helix 10	AB1	A	385	390	Right-handed alpha
Helix 11	AB2	A	398	400	Right-handed 310
Helix 12	AB3	A	401	435	Right-handed alpha
Helix 13	AB4	A	440	447	Right-handed alpha
Helix 14	AB5	A	488	507	Right-handed alpha
Helix 15	AB6	A	579	597	Right-handed alpha
Helix 16	AB7	A	598	605	Right-handed alpha
Helix 17	AB8	A	605	611	Right-handed alpha
Helix 18	AB9	A	630	645	Right-handed alpha
Helix 19	AC1	A	667	681	Right-handed alpha
Helix 20	AC2	A	696	705	Right-handed alpha
Helix 21	AC3	A	706	708	Right-handed 310
Helix 22	AC4	A	725	734	Right-handed alpha
Helix 23	AC5	A	751	756	Right-handed alpha
Helix 24	AC6	A	787	794	Right-handed alpha
Helix 25	AC7	A	804	817	Right-handed alpha
Helix 26	AC8	A	843	845	Right-handed 310
Helix 27	AC9	A	846	858	Right-handed alpha
Helix 28	AD1	A	860	873	Right-handed alpha
Helix 29	AD2	B	108	114	Right-handed alpha
Helix 30	AD3	B	132	142	Right-handed alpha
Helix 31	AD4	B	172	188	Right-handed alpha
Helix 32	AD5	B	207	213	Right-handed alpha
Helix 33	AD6	B	214	216	Right-handed 310
Helix 34	AD7	B	245	248	Right-handed 310
Helix 35	AD8	B	253	258	Right-handed alpha
Helix 36	AD9	B	262	267	Right-handed alpha
Helix 37	AE1	B	274	288	Right-handed alpha
Helix 38	AE2	B	315	320	Right-handed 310
Helix 39	AE3	B	329	341	Right-handed alpha
Helix 40	AE4	B	342	362	Right-handed alpha
Helix 41	AE5	B	368	374	Right-handed 310
Helix 42	AE6	B	387	391	Right-handed 310
Helix 43	AE7	B	416	438	Right-handed alpha
Helix 44	AE8	B	518	520	Right-handed 310
Helix 45	AE9	B	521	534	Right-handed alpha
Helix 46	AF1	B	550	554	Right-handed 310
Helix 47	AF2	B	563	577	Right-handed alpha
Helix 48	AF3	B	593	603	Right-handed alpha
Helix 49	AF4	B	621	629	Right-handed alpha
Helix 50	AF5	B	681	695	Right-handed alpha
Helix 51	AF6	B	700	704	Right-handed 310
Helix 52	AF7	B	706	714	Right-handed alpha
Helix 53	AF8	B	741	755	Right-handed alpha
Helix 54	AF9	B	758	767	Right-handed alpha

There are 14 sheets in PDB entry 9O4G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	201	207	parallel
Strand 3	A	173	178	parallel
Strand 4	A	256	258	parallel
Strand 5	A	315	318	anti-parallel
Strand 6	A	285	287	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	392	394	anti-parallel
Strand 3	A	367	369	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	473	475	anti-parallel
Strand 3	A	467	469	anti-parallel
Strand 4	A	515	530	anti-parallel
Strand 5	A	534	547	anti-parallel
Strand 6	A	555	565	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	574	first strand
Strand 2	B	478	490	anti-parallel
Strand 3	B	460	472	anti-parallel
Strand 4	B	442	456	anti-parallel
Strand 5	B	393	396	anti-parallel
Strand 6	A	820	831	parallel
Strand 7	A	721	723	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	574	first strand
Strand 2	B	478	490	anti-parallel
Strand 3	B	460	472	anti-parallel
Strand 4	B	442	456	anti-parallel
Strand 5	B	393	396	anti-parallel
Strand 6	A	820	831	parallel
Strand 7	A	740	749	parallel
Strand 8	A	773	776	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	689	first strand
Strand 2	A	652	657	parallel
Strand 3	A	621	626	parallel
Strand 4	A	713	716	parallel
Strand 5	A	783	786	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	167	first strand
Strand 2	B	148	152	parallel
Strand 3	B	117	124	parallel
Strand 4	B	192	199	parallel
Strand 5	B	249	252	anti-parallel
Strand 6	B	225	226	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	323	324	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	242	243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	298	299	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	412	413	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	541	549	parallel
Strand 3	B	508	514	parallel
Strand 4	B	611	614	parallel
Strand 5	B	676	678	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	639	first strand
Strand 2	B	718	720	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	669	first strand
Strand 2	B	644	646	anti-parallel
Strand 3	B	728	729	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O4G

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O4G