Analysis of interatomic Contacts of Structural Units in PDB entry:
9O4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O4J entry

There are 2 chains in PDB entry 9O4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 42SER 583
B
 ILE 10ALA 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9O4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 51Right-handed alpha
Helix 2
AA2
A
55 57Right-handed 310
Helix 3
AA3
A
58 76Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
95 108Right-handed alpha
Helix 6
AA6
A
217 234Right-handed alpha
Helix 7
AA7
A
236 253Right-handed alpha
Helix 8
AA8
A
256 274Right-handed alpha
Helix 9
AA9
A
291 299Right-handed alpha
Helix 10
AB1
A
300 316Right-handed alpha
Helix 11
AB2
A
335 345Right-handed alpha
Helix 12
AB3
A
367 380Right-handed alpha
Helix 13
AB4
A
423 428Right-handed 310
Helix 14
AB5
A
431 444Right-handed alpha
Helix 15
AB6
A
461 479Right-handed alpha
Helix 16
AB7
A
486 506Right-handed alpha
Helix 17
AB8
A
517 527Right-handed alpha
Helix 18
AB9
A
536 548Right-handed alpha
Helix 19
AC1
A
549 554Right-handed 310
Helix 20
AC2
B
11 15Right-handed 310
Helix 21
AC3
B
17 35Right-handed alpha
Helix 22
AC4
B
42 50Right-handed alpha
Helix 23
AC5
B
124 139Right-handed alpha
Helix 24
AC6
B
156 172Right-handed alpha
Helix 25
AC7
B
192 205Right-handed alpha
Helix 26
AC8
B
227 233Right-handed alpha
Helix 27
AC9
B
241 252Right-handed alpha
Helix 28
AD1
B
292 306Right-handed alpha
Helix 29
AD2
B
327 342Right-handed alpha
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There are 3 sheets in PDB entry 9O4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
B
63 71parallel
Strand 3
B
76 83anti-parallel
Strand 4
B
141 146anti-parallel
Strand 5
B
107 112parallel
Strand 6
B
184 191parallel
Strand 7
B
213 219parallel
Strand 8
B
280 286parallel
Strand 9
B
309 314parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
352 359parallel
Strand 3
A
322 327parallel
Strand 4
A
414 420parallel
Strand 5
A
447 453parallel
Strand 6
A
572 582anti-parallel
Strand 7
A
530 532anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
352 359parallel
Strand 3
A
322 327parallel
Strand 4
A
414 420parallel
Strand 5
A
447 453parallel
Strand 6
A
572 582anti-parallel
Strand 7
A
565 569anti-parallel
Strand 8
A
556 560anti-parallel
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