Analysis of interatomic Contacts of Structural Units in PDB entry:
9O4U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O4U entry

There are 4 chains in PDB entry 9O4U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1TYR 385
B
 ILE 38TYR 423
C
 THR 40TYR 423
D
 GLN 39TYR 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 9O4U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 28Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
46 68Right-handed alpha
Helix 4
AA4
A
74 96Right-handed alpha
Helix 5
AA5
A
110 125Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
134 147Right-handed alpha
Helix 8
AA8
A
148 151Right-handed 310
Helix 9
AA9
A
157 173Right-handed alpha
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
208 213Right-handed alpha
Helix 12
AB3
A
213 226Right-handed alpha
Helix 13
AB4
A
232 254Right-handed alpha
Helix 14
AB5
A
266 273Right-handed 310
Helix 15
AB6
A
274 283Right-handed alpha
Helix 16
AB7
A
291 308Right-handed alpha
Helix 17
AB8
A
327 331Right-handed 310
Helix 18
AB9
A
336 352Right-handed 310
Helix 19
AC1
A
356 361Right-handed alpha
Helix 20
AC2
A
366 373Right-handed alpha
Helix 21
AC3
B
41 66Right-handed alpha
Helix 22
AC4
B
68 73Right-handed alpha
Helix 23
AC5
B
84 107Right-handed alpha
Helix 24
AC6
B
112 133Right-handed alpha
Helix 25
AC7
B
147 163Right-handed alpha
Helix 26
AC8
B
163 168Right-handed alpha
Helix 27
AC9
B
172 185Right-handed alpha
Helix 28
AD1
B
186 189Right-handed 310
Helix 29
AD2
B
195 210Right-handed alpha
Helix 30
AD3
B
215 229Right-handed alpha
Helix 31
AD4
B
246 251Right-handed alpha
Helix 32
AD5
B
251 264Right-handed alpha
Helix 33
AD6
B
270 291Right-handed alpha
Helix 34
AD7
B
304 311Right-handed 310
Helix 35
AD8
B
312 321Right-handed alpha
Helix 36
AD9
B
329 346Right-handed alpha
Helix 37
AE1
B
365 369Right-handed 310
Helix 38
AE2
B
374 390Right-handed 310
Helix 39
AE3
B
394 399Right-handed alpha
Helix 40
AE4
B
404 411Right-handed alpha
Helix 41
AE5
C
41 67Right-handed alpha
Helix 42
AE6
C
68 73Right-handed alpha
Helix 43
AE7
C
84 106Right-handed alpha
Helix 44
AE8
C
112 133Right-handed alpha
Helix 45
AE9
C
148 163Right-handed alpha
Helix 46
AF1
C
163 168Right-handed alpha
Helix 47
AF2
C
172 185Right-handed alpha
Helix 48
AF3
C
186 189Right-handed 310
Helix 49
AF4
C
195 210Right-handed alpha
Helix 50
AF5
C
215 229Right-handed alpha
Helix 51
AF6
C
246 251Right-handed alpha
Helix 52
AF7
C
251 264Right-handed alpha
Helix 53
AF8
C
270 291Right-handed alpha
Helix 54
AF9
C
304 311Right-handed 310
Helix 55
AG1
C
312 321Right-handed alpha
Helix 56
AG2
C
329 346Right-handed alpha
Helix 57
AG3
C
365 369Right-handed 310
Helix 58
AG4
C
375 390Right-handed 310
Helix 59
AG5
C
394 399Right-handed alpha
Helix 60
AG6
C
404 411Right-handed alpha
Helix 61
AG7
D
41 66Right-handed alpha
Helix 62
AG8
D
68 73Right-handed alpha
Helix 63
AG9
D
84 106Right-handed alpha
Helix 64
AH1
D
112 134Right-handed alpha
Helix 65
AH2
D
148 163Right-handed alpha
Helix 66
AH3
D
163 168Right-handed alpha
Helix 67
AH4
D
172 185Right-handed alpha
Helix 68
AH5
D
186 189Right-handed 310
Helix 69
AH6
D
195 210Right-handed alpha
Helix 70
AH7
D
215 229Right-handed alpha
Helix 71
AH8
D
246 251Right-handed alpha
Helix 72
AH9
D
251 264Right-handed alpha
Helix 73
AI1
D
265 267Right-handed 310
Helix 74
AI2
D
270 291Right-handed alpha
Helix 75
AI3
D
304 311Right-handed 310
Helix 76
AI4
D
312 321Right-handed alpha
Helix 77
AI5
D
329 346Right-handed alpha
Helix 78
AI6
D
365 369Right-handed 310
Helix 79
AI7
D
374 390Right-handed 310
Helix 80
AI8
D
394 399Right-handed alpha
Helix 81
AI9
D
404 411Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9O4U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
230 232first strand
Strand 2
C
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
230 232first strand
Strand 2
D
235 236anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il