Analysis of interatomic Contacts of Structural Units in PDB entry:
9O58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O58 entry

There are 4 chains in PDB entry 9O58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 28	ASP 699
B	ARG 367	HIS 856
C	ASP 1	CYS 214
D	GLU 1	SER 221

There are 43 helices in PDB entry 9O58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	38	Right-handed 310
Helix 2	AA2	A	87	90	Right-handed 310
Helix 3	AA3	A	110	112	Right-handed 310
Helix 4	AA4	A	153	155	Right-handed 310
Helix 5	AA5	A	175	180	Right-handed alpha
Helix 6	AA6	A	232	239	Right-handed alpha
Helix 7	AA7	A	243	265	Right-handed alpha
Helix 8	AA8	A	313	325	Right-handed alpha
Helix 9	AA9	A	325	330	Right-handed alpha
Helix 10	AB1	A	343	347	Right-handed 310
Helix 11	AB2	A	397	411	Right-handed alpha
Helix 12	AB3	A	444	449	Right-handed 310
Helix 13	AB4	A	454	464	Right-handed alpha
Helix 14	AB5	A	580	585	Right-handed alpha
Helix 15	AB6	A	586	588	Right-handed 310
Helix 16	AB7	A	647	659	Right-handed alpha
Helix 17	AB8	A	661	671	Right-handed alpha
Helix 18	AB9	A	671	697	Right-handed alpha
Helix 19	AC1	B	372	378	Right-handed alpha
Helix 20	AC2	B	387	396	Right-handed alpha
Helix 21	AC3	B	403	420	Right-handed alpha
Helix 22	AC4	B	462	467	Right-handed alpha
Helix 23	AC5	B	468	470	Right-handed 310
Helix 24	AC6	B	473	477	Right-handed 310
Helix 25	AC7	B	480	496	Right-handed alpha
Helix 26	AC8	B	512	516	Right-handed 310
Helix 27	AC9	B	570	574	Right-handed 310
Helix 28	AD1	B	612	619	Right-handed alpha
Helix 29	AD2	B	629	633	Right-handed 310
Helix 30	AD3	B	634	641	Right-handed alpha
Helix 31	AD4	B	655	660	Right-handed alpha
Helix 32	AD5	B	666	689	Right-handed alpha
Helix 33	AD6	B	689	712	Right-handed alpha
Helix 34	AD7	B	720	738	Right-handed alpha
Helix 35	AD8	B	744	763	Right-handed alpha
Helix 36	AD9	B	770	788	Right-handed alpha
Helix 37	AE1	B	794	825	Right-handed alpha
Helix 38	AE2	B	830	832	Right-handed 310
Helix 39	AE3	B	833	838	Right-handed alpha
Helix 40	AE4	C	121	128	Right-handed alpha
Helix 41	AE5	D	62	65	Right-handed 310
Helix 42	AE6	D	87	91	Right-handed 310
Helix 43	AE7	D	191	195	Right-handed 310

There are 20 sheets in PDB entry 9O58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	163	168	anti-parallel
Strand 3	A	146	151	anti-parallel
Strand 4	A	137	141	anti-parallel
Strand 5	A	126	130	anti-parallel
Strand 6	A	114	119	anti-parallel
Strand 7	A	77	85	anti-parallel
Strand 8	A	67	74	anti-parallel
Strand 9	A	51	53	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	276	285	parallel
Strand 4	A	224	231	parallel
Strand 5	A	334	338	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	378	379	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	392	393	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	523	first strand
Strand 2	A	526	527	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	574	first strand
Strand 2	A	577	579	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	635	first strand
Strand 2	A	641	643	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	440	first strand
Strand 2	B	446	454	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	511	first strand
Strand 2	B	498	502	anti-parallel
Strand 3	B	521	524	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	558	first strand
Strand 2	B	579	580	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	610	611	first strand
Strand 2	B	598	601	anti-parallel
Strand 3	B	622	623	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	117	first strand
Strand 2	C	133	139	anti-parallel
Strand 3	C	173	178	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	195	196	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	153	154	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	106	108	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	146	149	anti-parallel
Strand 3	D	184	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O58

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O58