Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O5D entry

There are 5 chains in PDB entry 9O5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	CYS 5	LYS 380
B	LYS 34	MET 1598
A	GLY 94	ASN 345
C	ASP 3	PRO 569
E	VAL 10	ARG 1065

There are113 helices in PDB entry 9O5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	33	45	Right-handed alpha
Helix 2	AA2	D	47	51	Right-handed 310
Helix 3	AA3	D	97	117	Right-handed alpha
Helix 4	AA4	D	121	127	Right-handed alpha
Helix 5	AA5	D	127	143	Right-handed alpha
Helix 6	AA6	D	180	184	Right-handed 310
Helix 7	AA7	D	185	189	Right-handed 310
Helix 8	AA8	D	190	197	Right-handed alpha
Helix 9	AA9	D	198	200	Right-handed 310
Helix 10	AB1	D	205	214	Right-handed alpha
Helix 11	AB2	D	216	230	Right-handed alpha
Helix 12	AB3	D	251	257	Right-handed alpha
Helix 13	AB4	D	257	269	Right-handed alpha
Helix 14	AB5	D	277	288	Right-handed alpha
Helix 15	AB6	D	293	301	Right-handed alpha
Helix 16	AB7	D	303	307	Right-handed 310
Helix 17	AB8	D	309	320	Right-handed alpha
Helix 18	AB9	D	350	359	Right-handed alpha
Helix 19	AC1	D	361	370	Right-handed alpha
Helix 20	AC2	B	70	77	Right-handed alpha
Helix 21	AC3	B	110	122	Right-handed alpha
Helix 22	AC4	B	178	183	Right-handed 310
Helix 23	AC5	B	190	197	Right-handed alpha
Helix 24	AC6	B	198	210	Right-handed alpha
Helix 25	AC7	B	230	234	Right-handed 310
Helix 26	AC8	B	235	239	Right-handed 310
Helix 27	AC9	B	268	285	Right-handed alpha
Helix 28	AD1	B	305	318	Right-handed alpha
Helix 29	AD2	B	346	361	Right-handed alpha
Helix 30	AD3	B	458	467	Right-handed alpha
Helix 31	AD4	B	612	621	Right-handed 310
Helix 32	AD5	B	655	664	Right-handed alpha
Helix 33	AD6	B	734	738	Right-handed 310
Helix 34	AD7	B	743	749	Right-handed alpha
Helix 35	AD8	B	762	769	Right-handed alpha
Helix 36	AD9	B	794	810	Right-handed alpha
Helix 37	AE1	B	917	927	Right-handed alpha
Helix 38	AE2	B	930	934	Right-handed 310
Helix 39	AE3	B	936	940	Right-handed 310
Helix 40	AE4	B	952	961	Right-handed alpha
Helix 41	AE5	B	978	995	Right-handed alpha
Helix 42	AE6	B	1176	1185	Right-handed alpha
Helix 43	AE7	B	1207	1216	Right-handed alpha
Helix 44	AE8	B	1225	1237	Right-handed alpha
Helix 45	AE9	B	1309	1313	Right-handed 310
Helix 46	AF1	B	1394	1412	Right-handed alpha
Helix 47	AF2	B	1444	1448	Right-handed 310
Helix 48	AF3	B	1461	1463	Right-handed 310
Helix 49	AF4	B	1464	1480	Right-handed alpha
Helix 50	AF5	B	1555	1559	Right-handed 310
Helix 51	AF6	B	1567	1581	Right-handed alpha
Helix 52	AF7	B	1582	1584	Right-handed 310
Helix 53	AF8	B	1585	1598	Right-handed alpha
Helix 54	AF9	A	95	107	Right-handed alpha
Helix 55	AG1	A	176	180	Right-handed 310
Helix 56	AG2	A	202	206	Right-handed 310
Helix 57	AG3	A	215	225	Right-handed alpha
Helix 58	AG4	A	246	250	Right-handed 310
Helix 59	AG5	A	252	266	Right-handed alpha
Helix 60	AG6	A	286	299	Right-handed alpha
Helix 61	AG7	A	334	338	Right-handed 310
Helix 62	AG8	A	340	344	Right-handed 310
Helix 63	AG9	C	65	74	Right-handed alpha
Helix 64	AH1	C	76	80	Right-handed 310
Helix 65	AH2	C	135	161	Right-handed alpha
Helix 66	AH3	C	161	180	Right-handed alpha
Helix 67	AH4	C	190	195	Right-handed alpha
Helix 68	AH5	C	198	214	Right-handed alpha
Helix 69	AH6	C	222	224	Right-handed 310
Helix 70	AH7	C	231	236	Right-handed alpha
Helix 71	AH8	C	244	253	Right-handed alpha
Helix 72	AH9	C	266	273	Right-handed alpha
Helix 73	AI1	C	279	289	Right-handed alpha
Helix 74	AI2	C	294	303	Right-handed alpha
Helix 75	AI3	C	305	319	Right-handed alpha
Helix 76	AI4	C	346	356	Right-handed alpha
Helix 77	AI5	C	360	368	Right-handed alpha
Helix 78	AI6	C	374	378	Right-handed alpha
Helix 79	AI7	C	388	400	Right-handed alpha
Helix 80	AI8	C	480	488	Right-handed alpha
Helix 81	AI9	C	491	500	Right-handed alpha
Helix 82	AJ1	C	501	505	Right-handed 310
Helix 83	AJ2	C	506	517	Right-handed alpha
Helix 84	AJ3	C	525	534	Right-handed alpha
Helix 85	AJ4	C	536	547	Right-handed alpha
Helix 86	AJ5	E	27	38	Right-handed alpha
Helix 87	AJ6	E	47	52	Right-handed alpha
Helix 88	AJ7	E	117	134	Right-handed alpha
Helix 89	AJ8	E	175	177	Right-handed 310
Helix 90	AJ9	E	178	203	Right-handed alpha
Helix 91	AK1	E	234	249	Right-handed alpha
Helix 92	AK2	E	271	285	Right-handed alpha
Helix 93	AK3	E	309	320	Right-handed alpha
Helix 94	AK4	E	339	346	Right-handed alpha
Helix 95	AK5	E	374	379	Right-handed alpha
Helix 96	AK6	E	398	409	Right-handed alpha
Helix 97	AK7	E	466	475	Right-handed alpha
Helix 98	AK8	E	483	516	Right-handed alpha
Helix 99	AK9	E	517	520	Right-handed 310
Helix 100	AL1	E	523	529	Right-handed alpha
Helix 101	AL2	E	553	568	Right-handed alpha
Helix 102	AL3	E	572	576	Right-handed alpha
Helix 103	AL4	E	610	625	Right-handed alpha
Helix 104	AL5	E	673	689	Right-handed alpha
Helix 105	AL6	E	745	750	Right-handed alpha
Helix 106	AL7	E	763	768	Right-handed alpha
Helix 107	AL8	E	782	793	Right-handed alpha
Helix 108	AL9	E	811	829	Right-handed alpha
Helix 109	AM1	E	921	928	Right-handed 310
Helix 110	AM2	E	931	934	Right-handed 310
Helix 111	AM3	E	935	962	Right-handed alpha
Helix 112	AM4	E	994	999	Right-handed alpha
Helix 113	AM5	E	1052	1065	Right-handed alpha

There are 32 sheets in PDB entry 9O5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	27	first strand
Strand 2	D	9	16	anti-parallel
Strand 3	D	81	90	anti-parallel
Strand 4	D	62	66	anti-parallel
Strand 5	D	55	59	anti-parallel
Strand 6	C	84	88	anti-parallel
Strand 7	C	91	95	anti-parallel
Strand 8	C	123	131	anti-parallel
Strand 9	C	9	15	anti-parallel
Strand 10	C	21	26	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	81	90	anti-parallel
Strand 3	D	62	66	anti-parallel
Strand 4	D	55	59	anti-parallel
Strand 5	C	84	88	anti-parallel
Strand 6	C	91	95	anti-parallel
Strand 7	C	123	131	anti-parallel
Strand 8	C	98	99	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	154	158	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	177	first strand
Strand 2	D	233	236	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	247	first strand
Strand 2	D	323	325	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	332	first strand
Strand 2	D	375	380	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	88	89	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	137	146	anti-parallel
Strand 3	B	149	151	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	137	146	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	161	166	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	153	156	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	250	262	anti-parallel
Strand 3	B	215	226	anti-parallel
Strand 4	B	170	176	parallel
Strand 5	B	331	337	parallel
Strand 6	B	363	368	parallel
Strand 7	B	404	407	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	215	226	anti-parallel
Strand 3	B	250	262	anti-parallel
Strand 4	B	886	893	parallel
Strand 5	B	902	908	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	379	382	parallel
Strand 3	B	397	398	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	757	first strand
Strand 2	B	812	814	parallel
Strand 3	B	851	856	anti-parallel
Strand 4	B	859	865	anti-parallel
Strand 5	B	870	877	anti-parallel
Strand 6	B	770	777	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1351	1357	first strand
Strand 2	B	1369	1375	anti-parallel
Strand 3	B	1382	1390	anti-parallel
Strand 4	B	942	950	anti-parallel
Strand 5	B	1414	1419	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1351	1357	first strand
Strand 2	B	1369	1375	anti-parallel
Strand 3	B	1382	1390	anti-parallel
Strand 4	B	1482	1485	parallel
Strand 5	B	1501	1504	anti-parallel
Strand 6	B	1509	1512	anti-parallel
Strand 7	B	1545	1550	anti-parallel
Strand 8	B	1439	1442	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1204	1206	first strand
Strand 2	B	1257	1259	anti-parallel
Strand 3	B	1241	1242	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1254	1255	first strand
Strand 2	B	1296	1298	anti-parallel
Strand 3	B	1377	1378	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	184	190	parallel
Strand 3	A	166	171	parallel
Strand 4	A	238	244	parallel
Strand 5	A	267	278	parallel
Strand 6	A	313	320	anti-parallel
Strand 7	A	302	310	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	232	234	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	221	first strand
Strand 2	C	225	230	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	322	325	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	373	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	403	412	anti-parallel
Strand 4	C	551	557	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	64	first strand
Strand 2	E	15	20	anti-parallel
Strand 3	E	86	90	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	78	80	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	174	first strand
Strand 2	E	148	156	anti-parallel
Strand 3	E	93	101	parallel
Strand 4	E	256	263	parallel
Strand 5	E	287	293	parallel
Strand 6	E	324	325	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	E	115	116	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	137	first strand
Strand 2	E	144	145	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	386	395	first strand
Strand 2	E	457	465	anti-parallel
Strand 3	E	437	446	anti-parallel
Strand 4	E	424	434	anti-parallel
Strand 5	E	412	417	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	533	534	first strand
Strand 2	E	543	544	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	627	630	first strand
Strand 2	E	634	639	anti-parallel
Strand 3	E	649	658	anti-parallel
Strand 4	E	661	669	anti-parallel
Strand 5	E	577	586	anti-parallel
Strand 6	E	739	742	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	832	837	first strand
Strand 2	E	840	847	anti-parallel
Strand 3	E	865	871	anti-parallel
Strand 4	E	902	910	anti-parallel
Strand 5	E	794	802	anti-parallel
Strand 6	E	986	990	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5D