Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O5F entry

There is 1 chain in PDB entry 9O5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 231LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9O5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 262Right-handed alpha
Helix 2
AA2
A
274 284Right-handed alpha
Helix 3
AA3
A
294 300Right-handed alpha
Helix 4
AA4
A
311 328Right-handed alpha
Helix 5
AA5
A
347 354Right-handed alpha
Helix 6
AA6
A
357 365Right-handed 310
Helix 7
AA7
A
374 379Right-handed alpha
Helix 8
AA8
A
382 391Right-handed alpha
Helix 9
AA9
A
400 410Right-handed alpha
Helix 10
AB1
A
422 428Right-handed alpha
Helix 11
AB2
A
451 457Right-handed alpha
Helix 12
AB3
A
458 465Right-handed alpha
Helix 13
AB4
A
466 468Right-handed 310
Helix 14
AB5
A
472 485Right-handed alpha
Helix 15
AB6
A
489 501Right-handed alpha
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There are 3 sheets in PDB entry 9O5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
265 269parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 293first strand
Strand 2
A
445 450anti-parallel
Strand 3
A
329 331anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 399first strand
Strand 2
A
369 373parallel
Strand 3
A
415 419parallel
Strand 4
A
341 346anti-parallel
Strand 5
A
430 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il