Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O5S entry

There are 8 chains in PDB entry 9O5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 276
B	ILE 1	MET 99
P	GLU 1	VAL 10
G	GLU 3	GLY 119
Q	ASP 1	SER 102
C	GLY 1	PRO 276
H	GLY 1	PRO 276
L	GLY 1	ALA 69

There are 48 helices in PDB entry 9O5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	56	85	Right-handed alpha
Helix 3	AA3	A	137	150	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	253	255	Right-handed 310
Helix 8	AA8	G	88	92	Right-handed 310
Helix 9	AA9	Q	2	17	Right-handed alpha
Helix 10	AB1	Q	24	48	Right-handed alpha
Helix 11	AB2	Q	52	67	Right-handed alpha
Helix 12	AB3	Q	70	102	Right-handed alpha
Helix 13	AB4	C	49	53	Right-handed 310
Helix 14	AB5	C	56	85	Right-handed alpha
Helix 15	AB6	C	137	150	Right-handed alpha
Helix 16	AB7	C	151	162	Right-handed alpha
Helix 17	AB8	C	162	175	Right-handed alpha
Helix 18	AB9	C	175	180	Right-handed alpha
Helix 19	AC1	C	253	255	Right-handed 310
Helix 20	AC2	H	49	53	Right-handed 310
Helix 21	AC3	H	56	85	Right-handed alpha
Helix 22	AC4	H	137	150	Right-handed alpha
Helix 23	AC5	H	151	162	Right-handed alpha
Helix 24	AC6	H	162	175	Right-handed alpha
Helix 25	AC7	H	175	180	Right-handed alpha
Helix 26	AC8	L	49	53	Right-handed 310
Helix 27	AC9	L	56	85	Right-handed alpha
Helix 28	AD1	L	137	150	Right-handed alpha
Helix 29	AD2	L	151	162	Right-handed alpha
Helix 30	AD3	L	162	175	Right-handed alpha
Helix 31	AD4	L	175	180	Right-handed alpha
Helix 32	AD5	L	253	255	Right-handed 310
Helix 33	AD6	F	88	92	Right-handed 310
Helix 34	AD7	K	88	92	Right-handed 310
Helix 35	AD8	O	88	92	Right-handed 310
Helix 36	AD9	R	2	17	Right-handed alpha
Helix 37	AE1	R	21	23	Right-handed 310
Helix 38	AE2	R	24	48	Right-handed alpha
Helix 39	AE3	R	52	68	Right-handed alpha
Helix 40	AE4	R	70	102	Right-handed alpha
Helix 41	AE5	S	2	17	Right-handed alpha
Helix 42	AE6	S	24	48	Right-handed alpha
Helix 43	AE7	S	52	68	Right-handed alpha
Helix 44	AE8	S	70	102	Right-handed alpha
Helix 45	AE9	T	2	17	Right-handed alpha
Helix 46	AF1	T	24	48	Right-handed alpha
Helix 47	AF2	T	52	68	Right-handed alpha
Helix 48	AF3	T	70	102	Right-handed alpha

There are 40 sheets in PDB entry 9O5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	228	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	9	first strand
Strand 2	G	20	28	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	112	116	parallel
Strand 3	G	93	101	anti-parallel
Strand 4	G	33	41	anti-parallel
Strand 5	G	47	53	anti-parallel
Strand 6	G	59	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	112	116	parallel
Strand 3	G	93	101	anti-parallel
Strand 4	G	106	108	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	21	28	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	109	118	anti-parallel
Strand 7	C	121	126	anti-parallel
Strand 8	C	133	135	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	192	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	228	230	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	192	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	270	272	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	47	first strand
Strand 2	H	31	37	anti-parallel
Strand 3	H	21	28	anti-parallel
Strand 4	H	3	12	anti-parallel
Strand 5	H	94	103	anti-parallel
Strand 6	H	109	118	anti-parallel
Strand 7	H	121	126	anti-parallel
Strand 8	H	133	135	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	186	192	first strand
Strand 2	H	198	208	anti-parallel
Strand 3	H	241	250	anti-parallel
Strand 4	H	229	230	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	186	192	first strand
Strand 2	H	198	208	anti-parallel
Strand 3	H	241	250	anti-parallel
Strand 4	H	234	235	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	222	223	first strand
Strand 2	H	214	219	anti-parallel
Strand 3	H	257	262	anti-parallel
Strand 4	H	270	272	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	47	first strand
Strand 2	L	31	37	anti-parallel
Strand 3	L	21	28	anti-parallel
Strand 4	L	3	12	anti-parallel
Strand 5	L	94	103	anti-parallel
Strand 6	L	109	118	anti-parallel
Strand 7	L	121	126	anti-parallel
Strand 8	L	133	135	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	186	192	first strand
Strand 2	L	198	208	anti-parallel
Strand 3	L	241	250	anti-parallel
Strand 4	L	228	230	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	186	192	first strand
Strand 2	L	198	208	anti-parallel
Strand 3	L	241	250	anti-parallel
Strand 4	L	234	235	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	222	223	first strand
Strand 2	L	213	219	anti-parallel
Strand 3	L	257	263	anti-parallel
Strand 4	L	270	272	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	94	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	11	first strand
Strand 2	I	21	30	anti-parallel
Strand 3	I	62	70	anti-parallel
Strand 4	I	50	51	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	11	first strand
Strand 2	I	21	30	anti-parallel
Strand 3	I	62	70	anti-parallel
Strand 4	I	55	56	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	45	first strand
Strand 2	I	36	41	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	91	94	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	11	first strand
Strand 2	M	21	30	anti-parallel
Strand 3	M	62	70	anti-parallel
Strand 4	M	50	51	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	11	first strand
Strand 2	M	21	30	anti-parallel
Strand 3	M	62	70	anti-parallel
Strand 4	M	55	56	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	45	first strand
Strand 2	M	36	41	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	91	94	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	20	28	anti-parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	69	74	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	112	116	parallel
Strand 3	F	93	101	anti-parallel
Strand 4	F	33	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	59	61	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	112	116	parallel
Strand 3	F	93	101	anti-parallel
Strand 4	F	106	108	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	9	first strand
Strand 2	K	20	27	anti-parallel
Strand 3	K	79	84	anti-parallel
Strand 4	K	69	74	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	14	first strand
Strand 2	K	112	116	parallel
Strand 3	K	93	101	anti-parallel
Strand 4	K	33	41	anti-parallel
Strand 5	K	47	53	anti-parallel
Strand 6	K	59	61	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	14	first strand
Strand 2	K	112	116	parallel
Strand 3	K	93	101	anti-parallel
Strand 4	K	106	108	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	6	9	first strand
Strand 2	O	20	26	anti-parallel
Strand 3	O	79	84	anti-parallel
Strand 4	O	69	74	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	14	first strand
Strand 2	O	112	116	parallel
Strand 3	O	93	101	anti-parallel
Strand 4	O	33	41	anti-parallel
Strand 5	O	48	53	anti-parallel
Strand 6	O	59	61	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	14	first strand
Strand 2	O	112	116	parallel
Strand 3	O	93	101	anti-parallel
Strand 4	O	106	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5S