Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O5V entry

There are 3 chains in PDB entry 9O5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 20	ALA 614
B	THR 20	ALA 614
E	ASN 334	THR 372

There are 85 helices in PDB entry 9O5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	51	Right-handed alpha
Helix 2	AA2	A	55	82	Right-handed alpha
Helix 3	AA3	A	91	101	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed 310
Helix 5	AA5	A	109	130	Right-handed alpha
Helix 6	AA6	A	146	155	Right-handed alpha
Helix 7	AA7	A	157	171	Right-handed alpha
Helix 8	AA8	A	175	194	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	206	208	Right-handed 310
Helix 11	AB2	A	218	232	Right-handed alpha
Helix 12	AB3	A	233	252	Right-handed alpha
Helix 13	AB4	A	265	267	Right-handed 310
Helix 14	AB5	A	275	277	Right-handed 310
Helix 15	AB6	A	278	283	Right-handed alpha
Helix 16	AB7	A	293	299	Right-handed alpha
Helix 17	AB8	A	303	318	Right-handed alpha
Helix 18	AB9	A	324	331	Right-handed alpha
Helix 19	AC1	A	365	385	Right-handed alpha
Helix 20	AC2	A	386	388	Right-handed 310
Helix 21	AC3	A	389	393	Right-handed 310
Helix 22	AC4	A	399	413	Right-handed alpha
Helix 23	AC5	A	414	421	Right-handed alpha
Helix 24	AC6	A	433	446	Right-handed alpha
Helix 25	AC7	A	448	465	Right-handed alpha
Helix 26	AC8	A	469	471	Right-handed 310
Helix 27	AC9	A	472	484	Right-handed alpha
Helix 28	AD1	A	499	502	Right-handed 310
Helix 29	AD2	A	503	508	Right-handed alpha
Helix 30	AD3	A	513	533	Right-handed alpha
Helix 31	AD4	A	538	542	Right-handed 310
Helix 32	AD5	A	547	559	Right-handed alpha
Helix 33	AD6	A	565	574	Right-handed alpha
Helix 34	AD7	A	581	588	Right-handed alpha
Helix 35	AD8	A	588	599	Right-handed alpha
Helix 36	AD9	A	600	602	Right-handed 310
Helix 37	AE1	B	21	52	Right-handed alpha
Helix 38	AE2	B	55	82	Right-handed alpha
Helix 39	AE3	B	90	100	Right-handed alpha
Helix 40	AE4	B	104	108	Right-handed 310
Helix 41	AE5	B	109	130	Right-handed alpha
Helix 42	AE6	B	146	155	Right-handed alpha
Helix 43	AE7	B	157	171	Right-handed alpha
Helix 44	AE8	B	175	194	Right-handed alpha
Helix 45	AE9	B	198	205	Right-handed alpha
Helix 46	AF1	B	206	208	Right-handed 310
Helix 47	AF2	B	218	232	Right-handed alpha
Helix 48	AF3	B	233	252	Right-handed alpha
Helix 49	AF4	B	265	267	Right-handed 310
Helix 50	AF5	B	275	277	Right-handed 310
Helix 51	AF6	B	278	283	Right-handed alpha
Helix 52	AF7	B	293	300	Right-handed alpha
Helix 53	AF8	B	303	318	Right-handed alpha
Helix 54	AF9	B	324	329	Right-handed alpha
Helix 55	AG1	B	365	385	Right-handed alpha
Helix 56	AG2	B	386	388	Right-handed 310
Helix 57	AG3	B	389	393	Right-handed 310
Helix 58	AG4	B	397	413	Right-handed alpha
Helix 59	AG5	B	414	421	Right-handed alpha
Helix 60	AG6	B	433	446	Right-handed alpha
Helix 61	AG7	B	448	465	Right-handed alpha
Helix 62	AG8	B	469	471	Right-handed 310
Helix 63	AG9	B	472	484	Right-handed alpha
Helix 64	AH1	B	499	502	Right-handed 310
Helix 65	AH2	B	503	508	Right-handed alpha
Helix 66	AH3	B	512	533	Right-handed alpha
Helix 67	AH4	B	538	542	Right-handed 310
Helix 68	AH5	B	547	559	Right-handed alpha
Helix 69	AH6	B	565	575	Right-handed alpha
Helix 70	AH7	B	581	588	Right-handed alpha
Helix 71	AH8	B	588	599	Right-handed alpha
Helix 72	AH9	B	600	602	Right-handed 310
Helix 73	AI1	E	338	343	Right-handed alpha
Helix 74	AI2	E	365	370	Right-handed alpha
Helix 75	AI3	E	404	410	Right-handed 310
Helix 76	AI4	E	416	422	Right-handed alpha
Helix 77	AI5	E	438	443	Right-handed alpha
Helix 78	AI6	E	502	506	Right-handed 310
Helix 79	AI7	F	338	343	Right-handed alpha
Helix 80	AI8	F	365	370	Right-handed alpha
Helix 81	AI9	F	385	390	Right-handed 310
Helix 82	AJ1	F	404	410	Right-handed 310
Helix 83	AJ2	F	416	422	Right-handed alpha
Helix 84	AJ3	F	438	443	Right-handed alpha
Helix 85	AJ4	F	502	506	Right-handed 310

There are 15 sheets in PDB entry 9O5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	356	359	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	141	143	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	352	first strand
Strand 2	B	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	392	402	anti-parallel
Strand 3	E	508	517	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	392	402	anti-parallel
Strand 3	E	524	524	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	380	first strand
Strand 2	E	431	437	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	488	489	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	395	402	anti-parallel
Strand 3	F	508	515	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	376	380	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	524	525	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5V