Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O5W entry

There are 6 chains in PDB entry 9O5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	ARG 341
C	ASP 6	ARG 341
E	ASP 6	ARG 341
B	ASP 362	ILE 519
D	ASP 362	ILE 519
F	ASP 362	ILE 519

There are 30 helices in PDB entry 9O5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	72	Right-handed alpha
Helix 2	AA2	A	103	107	Right-handed 310
Helix 3	AA3	A	112	117	Right-handed alpha
Helix 4	AA4	A	131	135	Right-handed 310
Helix 5	AA5	A	199	208	Right-handed alpha
Helix 6	AA6	C	66	72	Right-handed alpha
Helix 7	AA7	C	103	107	Right-handed 310
Helix 8	AA8	C	112	117	Right-handed alpha
Helix 9	AA9	C	131	135	Right-handed 310
Helix 10	AB1	C	199	208	Right-handed alpha
Helix 11	AB2	E	66	72	Right-handed alpha
Helix 12	AB3	E	103	107	Right-handed 310
Helix 13	AB4	E	112	117	Right-handed alpha
Helix 14	AB5	E	131	135	Right-handed 310
Helix 15	AB6	E	199	208	Right-handed alpha
Helix 16	AB7	B	384	401	Right-handed alpha
Helix 17	AB8	B	402	407	Right-handed 310
Helix 18	AB9	B	421	473	Right-handed alpha
Helix 19	AC1	B	493	501	Right-handed alpha
Helix 20	AC2	B	505	510	Right-handed 310
Helix 21	AC3	D	384	401	Right-handed alpha
Helix 22	AC4	D	402	407	Right-handed 310
Helix 23	AC5	D	421	473	Right-handed alpha
Helix 24	AC6	D	493	501	Right-handed alpha
Helix 25	AC7	D	505	510	Right-handed 310
Helix 26	AC8	F	384	401	Right-handed alpha
Helix 27	AC9	F	402	407	Right-handed 310
Helix 28	AD1	F	421	473	Right-handed alpha
Helix 29	AD2	F	493	501	Right-handed alpha
Helix 30	AD3	F	505	510	Right-handed 310

There are 30 sheets in PDB entry 9O5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	383	first strand
Strand 2	B	369	375	anti-parallel
Strand 3	A	7	12	anti-parallel
Strand 4	B	484	486	anti-parallel
Strand 5	B	478	479	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	22	first strand
Strand 2	A	28	31	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	333	335	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	312	313	parallel
Strand 3	A	326	327	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	284	286	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	275	278	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	269	272	anti-parallel
Strand 5	A	161	165	anti-parallel
Strand 6	A	141	142	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	275	278	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	247	255	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	154	155	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	180	first strand
Strand 2	A	260	265	anti-parallel
Strand 3	A	215	219	anti-parallel
Strand 4	A	222	226	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	298	300	anti-parallel
Strand 3	A	320	322	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	383	first strand
Strand 2	D	369	375	anti-parallel
Strand 3	C	7	12	anti-parallel
Strand 4	D	484	486	anti-parallel
Strand 5	D	478	479	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	22	first strand
Strand 2	C	28	31	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	333	335	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	312	313	parallel
Strand 3	C	326	327	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	284	286	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	275	278	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	269	272	anti-parallel
Strand 5	C	161	165	anti-parallel
Strand 6	C	141	142	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	275	278	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	247	255	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	154	155	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	180	first strand
Strand 2	C	260	265	anti-parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	222	226	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	298	300	anti-parallel
Strand 3	C	320	322	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	378	383	first strand
Strand 2	F	369	375	anti-parallel
Strand 3	E	7	12	anti-parallel
Strand 4	F	484	486	anti-parallel
Strand 5	F	478	479	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	22	first strand
Strand 2	E	28	31	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	333	335	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	312	313	parallel
Strand 3	E	326	327	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	284	286	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	125	first strand
Strand 2	E	275	278	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	269	272	anti-parallel
Strand 5	E	161	165	anti-parallel
Strand 6	E	141	142	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	125	first strand
Strand 2	E	275	278	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	247	255	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	154	155	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	180	first strand
Strand 2	E	260	265	anti-parallel
Strand 3	E	215	219	anti-parallel
Strand 4	E	222	226	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	306	first strand
Strand 2	E	298	300	anti-parallel
Strand 3	E	320	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O5W