Analysis of interatomic Contacts of Structural Units in PDB entry:
9O60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O60 entry

There are 3 chains in PDB entry 9O60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13ALA 96
a
 LYS 3ASP 203
b
 LYS 9PRO 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9O60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
82 86Right-handed 310
Helix 2
AA2
b
86 90Right-handed 310
Helix 3
AA3
b
133 139Right-handed alpha
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There are 12 sheets in PDB entry 9O60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
68 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
94 96anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
4 5first strand
Strand 2
a
24 25anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
11 14first strand
Strand 2
a
120 125parallel
Strand 3
a
88 94anti-parallel
Strand 4
a
33 39anti-parallel
Strand 5
a
45 52anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
11 14first strand
Strand 2
a
120 125parallel
Strand 3
a
88 94anti-parallel
Strand 4
a
115 116anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
19 21first strand
Strand 2
a
73 78anti-parallel
Strand 3
a
63 68anti-parallel
Strand 4
a
59 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
137 140first strand
Strand 2
a
145 148anti-parallel
Strand 3
a
181 188anti-parallel
Strand 4
a
173 177anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
10 14first strand
Strand 2
b
109 114parallel
Strand 3
b
91 98anti-parallel
Strand 4
b
32 38anti-parallel
Strand 5
b
45 51anti-parallel
Strand 6
b
56 59anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
10 14first strand
Strand 2
b
109 114parallel
Strand 3
b
91 98anti-parallel
Strand 4
b
103 105anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
19 22first strand
Strand 2
b
79 82anti-parallel
Strand 3
b
68 71anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
125 129first strand
Strand 2
b
143 151anti-parallel
Strand 3
b
183 190anti-parallel
Strand 4
b
172 178anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
157 161first strand
Strand 2
b
201 205anti-parallel
Strand 3
b
215 217anti-parallel
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