Analysis of interatomic Contacts of Structural Units in PDB entry:
9O7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O7E entry

There are 6 chains in PDB entry 9O7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 137	TYR 303
E	VAL 6	LYS 229
F	SER 17	SER 232
B	ALA 26	TYR 303
C	VAL 6	LYS 229
D	SER 17	SER 232

There are 40 helices in PDB entry 9O7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	158	Right-handed alpha
Helix 2	AA2	A	158	163	Right-handed alpha
Helix 3	AA3	A	163	178	Right-handed alpha
Helix 4	AA4	A	180	184	Right-handed 310
Helix 5	AA5	A	189	217	Right-handed alpha
Helix 6	AA6	A	228	232	Right-handed 310
Helix 7	AA7	A	254	262	Right-handed alpha
Helix 8	AA8	A	283	297	Right-handed alpha
Helix 9	AA9	E	32	34	Right-handed 310
Helix 10	AB1	E	66	69	Right-handed 310
Helix 11	AB2	E	91	95	Right-handed 310
Helix 12	AB3	E	142	146	Right-handed 310
Helix 13	AB4	E	171	173	Right-handed 310
Helix 14	AB5	E	202	207	Right-handed 310
Helix 15	AB6	E	216	219	Right-handed 310
Helix 16	AB7	F	95	99	Right-handed 310
Helix 17	AB8	F	141	146	Right-handed alpha
Helix 18	AB9	F	201	208	Right-handed alpha
Helix 19	AC1	B	27	39	Right-handed alpha
Helix 20	AC2	B	41	56	Right-handed alpha
Helix 21	AC3	B	59	72	Right-handed alpha
Helix 22	AC4	B	77	90	Right-handed alpha
Helix 23	AC5	B	93	106	Right-handed alpha
Helix 24	AC6	B	109	127	Right-handed alpha
Helix 25	AC7	B	134	184	Right-handed alpha
Helix 26	AC8	B	190	224	Right-handed alpha
Helix 27	AC9	B	228	232	Right-handed 310
Helix 28	AD1	B	254	262	Right-handed alpha
Helix 29	AD2	B	283	297	Right-handed alpha
Helix 30	AD3	B	298	301	Right-handed 310
Helix 31	AD4	C	32	34	Right-handed 310
Helix 32	AD5	C	66	69	Right-handed 310
Helix 33	AD6	C	91	95	Right-handed 310
Helix 34	AD7	C	142	144	Right-handed 310
Helix 35	AD8	C	171	173	Right-handed 310
Helix 36	AD9	C	203	207	Right-handed 310
Helix 37	AE1	C	216	219	Right-handed 310
Helix 38	AE2	D	95	99	Right-handed 310
Helix 39	AE3	D	141	146	Right-handed alpha
Helix 40	AE4	D	201	208	Right-handed alpha

There are 25 sheets in PDB entry 9O7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	243	245	anti-parallel
Strand 3	A	281	282	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	22	29	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	72	77	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	122	126	parallel
Strand 3	E	96	105	anti-parallel
Strand 4	E	36	43	anti-parallel
Strand 5	E	50	56	anti-parallel
Strand 6	E	62	64	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	122	126	parallel
Strand 3	E	96	105	anti-parallel
Strand 4	E	115	118	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	150	160	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	150	160	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	184	185	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	169	first strand
Strand 2	E	209	215	anti-parallel
Strand 3	E	220	226	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	27	first strand
Strand 2	F	121	125	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	50	54	anti-parallel
Strand 5	F	61	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	27	first strand
Strand 2	F	121	125	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	115	117	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	38	first strand
Strand 2	F	86	91	anti-parallel
Strand 3	F	78	79	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	150	159	anti-parallel
Strand 3	F	192	200	anti-parallel
Strand 4	F	179	181	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	150	159	anti-parallel
Strand 3	F	192	200	anti-parallel
Strand 4	F	185	186	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	175	first strand
Strand 2	F	165	170	anti-parallel
Strand 3	F	211	217	anti-parallel
Strand 4	F	220	226	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	243	245	anti-parallel
Strand 3	B	281	282	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	82	87	anti-parallel
Strand 4	C	72	77	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	122	126	parallel
Strand 3	C	96	105	anti-parallel
Strand 4	C	36	43	anti-parallel
Strand 5	C	50	55	anti-parallel
Strand 6	C	62	64	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	150	160	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	150	160	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	184	185	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	209	215	anti-parallel
Strand 3	C	220	226	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	121	125	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	50	54	anti-parallel
Strand 5	D	61	64	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	121	125	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	115	117	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	78	82	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	150	159	anti-parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	179	181	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	150	159	anti-parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	185	186	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	165	170	anti-parallel
Strand 3	D	211	217	anti-parallel
Strand 4	D	220	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O7E