Analysis of interatomic Contacts of Structural Units in PDB entry:
9O7G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O7G entry

There are 3 chains in PDB entry 9O7G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 6VAL 126
B
 ASP 226ASN 297
D
 SER 17LEU 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9O7G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
32 34Right-handed 310
Helix 2
AA2
C
91 95Right-handed 310
Helix 3
AA3
B
228 232Right-handed 310
Helix 4
AA4
B
254 264Right-handed alpha
Helix 5
AA5
B
283 295Right-handed alpha
Helix 6
AA6
D
95 99Right-handed 310
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There are 6 sheets in PDB entry 9O7G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
122 125parallel
Strand 3
C
96 105anti-parallel
Strand 4
C
36 43anti-parallel
Strand 5
C
49 55anti-parallel
Strand 6
C
62 64anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 27first strand
Strand 2
C
82 87anti-parallel
Strand 3
C
72 77anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 253first strand
Strand 2
B
243 245anti-parallel
Strand 3
B
281 282anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 27first strand
Strand 2
D
121 125parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
50 54anti-parallel
Strand 5
D
61 64anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 27first strand
Strand 2
D
121 125parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
115 117anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 38first strand
Strand 2
D
86 91anti-parallel
Strand 3
D
78 79anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il