Analysis of interatomic Contacts of Structural Units in PDB entry:
9O7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O7O entry

There are 6 chains in PDB entry 9O7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	MET 368
B	ILE 5	GLU 610
C	THR 9	MET 368
D	ILE 5	ILE 607
F	T 1	A 74
H	T 1	A 74

There are 87 helices in PDB entry 9O7O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	23	23	Right-handed 310
Helix 3	AA3	A	25	26	Right-handed 310
Helix 4	AA4	A	27	32	Right-handed alpha
Helix 5	AA5	A	45	49	Right-handed 310
Helix 6	AA6	A	71	92	Right-handed alpha
Helix 7	AA7	A	93	96	Right-handed 310
Helix 8	AA8	A	101	108	Right-handed alpha
Helix 9	AA9	A	109	110	Right-handed 310
Helix 10	AB1	A	111	115	Right-handed 310
Helix 11	AB2	A	118	134	Right-handed alpha
Helix 12	AB3	A	136	140	Right-handed 310
Helix 13	AB4	A	203	213	Right-handed alpha
Helix 14	AB5	A	214	220	Right-handed alpha
Helix 15	AB6	A	231	244	Right-handed alpha
Helix 16	AB7	A	256	269	Right-handed alpha
Helix 17	AB8	A	273	275	Right-handed 310
Helix 18	AB9	A	276	281	Right-handed alpha
Helix 19	AC1	A	291	298	Right-handed alpha
Helix 20	AC2	A	306	318	Right-handed alpha
Helix 21	AC3	A	319	323	Right-handed 310
Helix 22	AC4	A	325	338	Right-handed alpha
Helix 23	AC5	A	342	351	Right-handed 310
Helix 24	AC6	A	352	357	Right-handed alpha
Helix 25	AC7	A	357	367	Right-handed alpha
Helix 26	AC8	B	6	13	Right-handed alpha
Helix 27	AC9	B	17	25	Right-handed alpha
Helix 28	AD1	B	33	57	Right-handed alpha
Helix 29	AD2	B	86	88	Right-handed 310
Helix 30	AD3	B	89	96	Right-handed alpha
Helix 31	AD4	B	115	128	Right-handed alpha
Helix 32	AD5	B	191	203	Right-handed alpha
Helix 33	AD6	B	242	252	Right-handed alpha
Helix 34	AD7	B	257	265	Right-handed alpha
Helix 35	AD8	B	270	282	Right-handed alpha
Helix 36	AD9	B	288	292	Right-handed 310
Helix 37	AE1	B	293	305	Right-handed alpha
Helix 38	AE2	B	321	330	Right-handed alpha
Helix 39	AE3	B	376	380	Right-handed 310
Helix 40	AE4	B	385	388	Right-handed 310
Helix 41	AE5	B	389	398	Right-handed alpha
Helix 42	AE6	B	399	404	Right-handed alpha
Helix 43	AE7	B	407	411	Right-handed 310
Helix 44	AE8	B	442	450	Right-handed alpha
Helix 45	AE9	B	452	466	Right-handed alpha
Helix 46	AF1	B	468	481	Right-handed alpha
Helix 47	AF2	B	481	490	Right-handed alpha
Helix 48	AF3	B	491	495	Right-handed 310
Helix 49	AF4	B	501	510	Right-handed alpha
Helix 50	AF5	B	592	597	Right-handed 310
Helix 51	AF6	B	604	609	Right-handed alpha
Helix 52	AF7	C	10	33	Right-handed alpha
Helix 53	AF8	C	45	47	Right-handed 310
Helix 54	AF9	C	71	96	Right-handed alpha
Helix 55	AG1	C	101	109	Right-handed alpha
Helix 56	AG2	C	110	115	Right-handed 310
Helix 57	AG3	C	118	134	Right-handed alpha
Helix 58	AG4	C	203	213	Right-handed alpha
Helix 59	AG5	C	214	219	Right-handed alpha
Helix 60	AG6	C	231	245	Right-handed alpha
Helix 61	AG7	C	256	268	Right-handed alpha
Helix 62	AG8	C	273	275	Right-handed 310
Helix 63	AG9	C	276	281	Right-handed alpha
Helix 64	AH1	C	291	299	Right-handed alpha
Helix 65	AH2	C	306	318	Right-handed alpha
Helix 66	AH3	C	324	338	Right-handed alpha
Helix 67	AH4	C	343	350	Right-handed 310
Helix 68	AH5	C	352	357	Right-handed alpha
Helix 69	AH6	C	357	367	Right-handed alpha
Helix 70	AH7	D	6	13	Right-handed alpha
Helix 71	AH8	D	17	25	Right-handed alpha
Helix 72	AH9	D	26	29	Right-handed 310
Helix 73	AI1	D	33	56	Right-handed alpha
Helix 74	AI2	D	89	96	Right-handed alpha
Helix 75	AI3	D	115	129	Right-handed alpha
Helix 76	AI4	D	191	203	Right-handed alpha
Helix 77	AI5	D	242	253	Right-handed alpha
Helix 78	AI6	D	257	265	Right-handed alpha
Helix 79	AI7	D	272	280	Right-handed alpha
Helix 80	AI8	D	293	305	Right-handed alpha
Helix 81	AI9	D	320	332	Right-handed alpha
Helix 82	AJ1	D	389	394	Right-handed alpha
Helix 83	AJ2	D	395	398	Right-handed 310
Helix 84	AJ3	D	399	404	Right-handed 310
Helix 85	AJ4	D	448	495	Right-handed alpha
Helix 86	AJ5	D	500	510	Right-handed alpha
Helix 87	AJ6	D	603	607	Right-handed 310

There are 25 sheets in PDB entry 9O7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	67	68	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	57	59	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	142	143	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	150	152	anti-parallel
Strand 3	A	222	225	anti-parallel
Strand 4	A	198	201	parallel
Strand 5	A	249	252	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	155	158	anti-parallel
Strand 3	A	189	193	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	164	165	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	339	340	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	D	99	100	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	166	first strand
Strand 2	B	144	151	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	173	180	anti-parallel
Strand 5	B	74	80	anti-parallel
Strand 6	B	61	67	anti-parallel
Strand 7	B	207	211	parallel
Strand 8	B	217	220	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	D	14	15	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	353	361	anti-parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	372	373	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	519	first strand
Strand 2	B	525	532	anti-parallel
Strand 3	B	581	586	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	544	first strand
Strand 2	B	572	576	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	64	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	58	60	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	142	143	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	150	152	anti-parallel
Strand 3	C	221	225	anti-parallel
Strand 4	C	197	201	parallel
Strand 5	C	249	250	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	190	193	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	339	341	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	166	first strand
Strand 2	D	144	151	anti-parallel
Strand 3	D	132	137	anti-parallel
Strand 4	D	173	180	anti-parallel
Strand 5	D	74	80	anti-parallel
Strand 6	D	61	67	anti-parallel
Strand 7	D	207	211	parallel
Strand 8	D	217	220	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	356	361	anti-parallel
Strand 3	D	417	423	anti-parallel
Strand 4	D	372	377	parallel
Strand 5	D	380	382	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	518	first strand
Strand 2	D	524	532	anti-parallel
Strand 3	D	581	582	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	518	first strand
Strand 2	D	524	532	anti-parallel
Strand 3	D	585	588	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	544	first strand
Strand 2	D	572	577	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	548	first strand
Strand 2	D	568	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O7O