Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O8E entry

There are 5 chains in PDB entry 9O8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 341HIS 449
B
 SER 341HIS 449
C
 SER 341HIS 449
D
 SER 341HIS 449
E
 SER 341HIS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9O8E

There are 9 sheets in PDB entry 9O8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
342 350first strand
Strand 2
B
342 350parallel
Strand 3
A
342 350parallel
Strand 4
C
342 350parallel
Strand 5
E
342 350parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
357 362first strand
Strand 2
B
357 362parallel
Strand 3
A
357 362parallel
Strand 4
C
357 362parallel
Strand 5
E
357 362parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 387first strand
Strand 2
B
368 387parallel
Strand 3
A
368 387parallel
Strand 4
C
368 387parallel
Strand 5
E
368 387parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
391 394first strand
Strand 2
B
391 394parallel
Strand 3
A
391 394parallel
Strand 4
C
391 394parallel
Strand 5
E
391 394parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
398 400first strand
Strand 2
B
398 400parallel
Strand 3
A
398 400parallel
Strand 4
C
398 400parallel
Strand 5
E
398 400parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
406 411first strand
Strand 2
B
406 411parallel
Strand 3
A
406 411parallel
Strand 4
C
406 411parallel
Strand 5
E
406 411parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
417 420first strand
Strand 2
B
417 420parallel
Strand 3
A
417 420parallel
Strand 4
C
417 420parallel
Strand 5
E
417 420parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
424 438first strand
Strand 2
B
424 438parallel
Strand 3
A
424 438parallel
Strand 4
C
424 438parallel
Strand 5
E
424 438parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
443 448first strand
Strand 2
B
443 448parallel
Strand 3
A
443 448parallel
Strand 4
C
443 448parallel
Strand 5
E
443 448parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il