Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O8J entry

There are 2 chains in PDB entry 9O8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLU 238
B
 LYS 4GLU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9O8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 26Right-handed alpha
Helix 2
AA2
A
37 54Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
91 94Right-handed 310
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
114 124Right-handed alpha
Helix 8
AA8
A
138 146Right-handed 310
Helix 9
AA9
A
149 153Right-handed 310
Helix 10
AB1
A
158 174Right-handed alpha
Helix 11
AB2
A
174 180Right-handed alpha
Helix 12
AB3
A
189 202Right-handed alpha
Helix 13
AB4
A
204 211Right-handed alpha
Helix 14
AB5
B
20 26Right-handed alpha
Helix 15
AB6
B
37 54Right-handed alpha
Helix 16
AB7
B
66 81Right-handed alpha
Helix 17
AB8
B
91 94Right-handed 310
Helix 18
AB9
B
98 102Right-handed 310
Helix 19
AC1
B
108 113Right-handed alpha
Helix 20
AC2
B
114 124Right-handed alpha
Helix 21
AC3
B
138 146Right-handed 310
Helix 22
AC4
B
158 174Right-handed alpha
Helix 23
AC5
B
174 180Right-handed alpha
Helix 24
AC6
B
189 202Right-handed alpha
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There are 2 sheets in PDB entry 9O8J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
60 63parallel
Strand 3
A
183 188parallel
Strand 4
A
10 16parallel
Strand 5
A
219 224anti-parallel
Strand 6
A
230 236anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
60 63parallel
Strand 3
B
183 188parallel
Strand 4
B
10 16parallel
Strand 5
B
219 224anti-parallel
Strand 6
B
230 236anti-parallel
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