Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O8M entry

There are 10 chains in PDB entry 9O8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	SER 123
B	GLN 1	LEU 116
C	GLN 1	SER 123
D	GLN 1	LEU 116
K	ASN 33	VAL 505
J	SER 519	LEU 663
E	ASN 33	VAL 505
F	SER 519	LEU 663
I	ASN 33	VAL 505
L	SER 519	LEU 663

There are 55 helices in PDB entry 9O8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	93	Right-handed 310
Helix 2	AA2	B	25	29	Right-handed 310
Helix 3	AA3	B	84	88	Right-handed 310
Helix 4	AA4	B	99	103	Right-handed 310
Helix 5	AA5	C	28	32	Right-handed 310
Helix 6	AA6	C	66	68	Right-handed 310
Helix 7	AA7	C	89	93	Right-handed 310
Helix 8	AA8	D	25	29	Right-handed 310
Helix 9	AA9	D	84	88	Right-handed 310
Helix 10	AB1	D	99	103	Right-handed 310
Helix 11	AB2	K	70	74	Right-handed 310
Helix 12	AB3	K	96	98	Right-handed 310
Helix 13	AB4	K	99	117	Right-handed alpha
Helix 14	AB5	K	122	127	Right-handed 310
Helix 15	AB6	K	335	354	Right-handed alpha
Helix 16	AB7	K	368	373	Right-handed alpha
Helix 17	AB8	K	474	481	Right-handed alpha
Helix 18	AB9	J	523	528	Right-handed 310
Helix 19	AC1	J	531	535	Right-handed 310
Helix 20	AC2	J	536	544	Right-handed alpha
Helix 21	AC3	J	570	597	Right-handed alpha
Helix 22	AC4	J	611	615	Right-handed 310
Helix 23	AC5	J	618	626	Right-handed alpha
Helix 24	AC6	J	627	635	Right-handed alpha
Helix 25	AC7	J	638	662	Right-handed alpha
Helix 26	AC8	E	70	74	Right-handed 310
Helix 27	AC9	E	96	98	Right-handed 310
Helix 28	AD1	E	99	117	Right-handed alpha
Helix 29	AD2	E	122	127	Right-handed 310
Helix 30	AD3	E	335	354	Right-handed alpha
Helix 31	AD4	E	368	373	Right-handed alpha
Helix 32	AD5	E	474	484	Right-handed alpha
Helix 33	AD6	F	523	528	Right-handed 310
Helix 34	AD7	F	529	534	Right-handed alpha
Helix 35	AD8	F	536	544	Right-handed alpha
Helix 36	AD9	F	570	596	Right-handed alpha
Helix 37	AE1	F	611	615	Right-handed 310
Helix 38	AE2	F	618	626	Right-handed alpha
Helix 39	AE3	F	627	635	Right-handed alpha
Helix 40	AE4	F	638	662	Right-handed alpha
Helix 41	AE5	I	70	74	Right-handed 310
Helix 42	AE6	I	96	98	Right-handed 310
Helix 43	AE7	I	99	117	Right-handed alpha
Helix 44	AE8	I	122	127	Right-handed 310
Helix 45	AE9	I	335	354	Right-handed alpha
Helix 46	AF1	I	368	373	Right-handed alpha
Helix 47	AF2	I	475	484	Right-handed alpha
Helix 48	AF3	L	523	528	Right-handed 310
Helix 49	AF4	L	531	535	Right-handed 310
Helix 50	AF5	L	536	544	Right-handed alpha
Helix 51	AF6	L	570	597	Right-handed alpha
Helix 52	AF7	L	611	615	Right-handed 310
Helix 53	AF8	L	618	626	Right-handed alpha
Helix 54	AF9	L	627	635	Right-handed alpha
Helix 55	AG1	L	638	662	Right-handed alpha

There are 39 sheets in PDB entry 9O8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	117	121	parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	35	41	anti-parallel
Strand 5	A	48	54	anti-parallel
Strand 6	A	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	117	121	parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	112	113	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	111	116	parallel
Strand 3	B	89	97	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	44	51	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	111	116	parallel
Strand 3	B	89	97	anti-parallel
Strand 4	B	104	107	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	67	72	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	117	121	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	54	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	117	121	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	112	113	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	111	116	parallel
Strand 3	D	89	92	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	44	50	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	67	72	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	104	107	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	494	499	first strand
Strand 2	K	35	40	anti-parallel
Strand 3	J	603	609	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	47	first strand
Strand 2	K	486	491	anti-parallel
Strand 3	K	223	228	anti-parallel
Strand 4	K	242	245	anti-parallel
Strand 5	K	83	85	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	75	76	first strand
Strand 2	K	53	56	parallel
Strand 3	K	216	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	236	239	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	177	first strand
Strand 2	K	154	162	anti-parallel
Strand 3	K	129	133	anti-parallel
Strand 4	K	189	193	anti-parallel
Strand 5	K	181	183	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	201	203	first strand
Strand 2	K	433	435	parallel
Strand 3	K	423	424	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	443	456	anti-parallel
Strand 3	K	283	298	anti-parallel
Strand 4	K	330	334	anti-parallel
Strand 5	K	413	420	anti-parallel
Strand 6	K	381	385	anti-parallel
Strand 7	K	376	378	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	271	273	first strand
Strand 2	K	283	298	anti-parallel
Strand 3	K	443	456	anti-parallel
Strand 4	K	465	470	anti-parallel
Strand 5	K	358	361	parallel
Strand 6	K	394	395	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	301	312	first strand
Strand 2	K	315	323	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	85	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	260	first strand
Strand 2	E	443	456	anti-parallel
Strand 3	E	283	298	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	420	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	376	378	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	283	298	anti-parallel
Strand 3	E	443	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	358	361	parallel
Strand 6	E	394	396	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	312	first strand
Strand 2	E	315	323	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	494	499	first strand
Strand 2	I	35	40	anti-parallel
Strand 3	L	603	609	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	486	491	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel
Strand 5	I	83	85	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	76	first strand
Strand 2	I	53	56	parallel
Strand 3	I	216	218	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	94	first strand
Strand 2	I	236	239	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	169	177	first strand
Strand 2	I	154	162	anti-parallel
Strand 3	I	129	133	anti-parallel
Strand 4	I	189	193	anti-parallel
Strand 5	I	181	183	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	201	203	first strand
Strand 2	I	433	435	parallel
Strand 3	I	423	424	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	261	first strand
Strand 2	I	443	456	anti-parallel
Strand 3	I	284	298	anti-parallel
Strand 4	I	330	334	anti-parallel
Strand 5	I	413	420	anti-parallel
Strand 6	I	381	385	anti-parallel
Strand 7	I	376	378	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	443	456	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	358	361	parallel
Strand 6	I	394	395	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	312	first strand
Strand 2	I	315	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8M