Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O8P entry

There are 6 chains in PDB entry 9O8P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	MET 368
B	ILE 5	GLU 609
C	ARG 10	MET 368
D	ILE 5	ILE 607
F	A 1	T 74
H	A 1	T 74

There are 82 helices in PDB entry 9O8P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	32	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	71	96	Right-handed alpha
Helix 4	AA4	A	100	108	Right-handed alpha
Helix 5	AA5	A	109	111	Right-handed 310
Helix 6	AA6	A	119	134	Right-handed alpha
Helix 7	AA7	A	136	141	Right-handed 310
Helix 8	AA8	A	170	174	Right-handed alpha
Helix 9	AA9	A	184	188	Right-handed 310
Helix 10	AB1	A	203	213	Right-handed alpha
Helix 11	AB2	A	214	220	Right-handed alpha
Helix 12	AB3	A	231	246	Right-handed alpha
Helix 13	AB4	A	256	268	Right-handed alpha
Helix 14	AB5	A	270	275	Right-handed 310
Helix 15	AB6	A	276	281	Right-handed alpha
Helix 16	AB7	A	293	298	Right-handed alpha
Helix 17	AB8	A	306	319	Right-handed alpha
Helix 18	AB9	A	320	323	Right-handed 310
Helix 19	AC1	A	324	338	Right-handed alpha
Helix 20	AC2	A	342	350	Right-handed 310
Helix 21	AC3	A	352	357	Right-handed alpha
Helix 22	AC4	A	359	366	Right-handed alpha
Helix 23	AC5	B	6	10	Right-handed alpha
Helix 24	AC6	B	17	25	Right-handed alpha
Helix 25	AC7	B	26	30	Right-handed 310
Helix 26	AC8	B	33	56	Right-handed alpha
Helix 27	AC9	B	89	95	Right-handed alpha
Helix 28	AD1	B	117	128	Right-handed alpha
Helix 29	AD2	B	191	202	Right-handed alpha
Helix 30	AD3	B	242	253	Right-handed alpha
Helix 31	AD4	B	257	265	Right-handed alpha
Helix 32	AD5	B	270	282	Right-handed alpha
Helix 33	AD6	B	288	292	Right-handed 310
Helix 34	AD7	B	293	307	Right-handed alpha
Helix 35	AD8	B	321	333	Right-handed alpha
Helix 36	AD9	B	385	388	Right-handed 310
Helix 37	AE1	B	389	398	Right-handed alpha
Helix 38	AE2	B	399	404	Right-handed 310
Helix 39	AE3	B	441	481	Right-handed alpha
Helix 40	AE4	B	481	495	Right-handed alpha
Helix 41	AE5	B	501	510	Right-handed alpha
Helix 42	AE6	B	593	597	Right-handed 310
Helix 43	AE7	C	11	33	Right-handed alpha
Helix 44	AE8	C	45	47	Right-handed 310
Helix 45	AE9	C	71	96	Right-handed alpha
Helix 46	AF1	C	100	109	Right-handed alpha
Helix 47	AF2	C	119	134	Right-handed alpha
Helix 48	AF3	C	136	140	Right-handed 310
Helix 49	AF4	C	184	188	Right-handed 310
Helix 50	AF5	C	203	212	Right-handed alpha
Helix 51	AF6	C	214	220	Right-handed alpha
Helix 52	AF7	C	231	245	Right-handed alpha
Helix 53	AF8	C	256	268	Right-handed alpha
Helix 54	AF9	C	270	275	Right-handed 310
Helix 55	AG1	C	276	281	Right-handed alpha
Helix 56	AG2	C	293	298	Right-handed alpha
Helix 57	AG3	C	306	317	Right-handed alpha
Helix 58	AG4	C	319	323	Right-handed 310
Helix 59	AG5	C	324	325	Right-handed 310
Helix 60	AG6	C	326	338	Right-handed alpha
Helix 61	AG7	C	342	347	Right-handed 310
Helix 62	AG8	C	352	358	Right-handed alpha
Helix 63	AG9	C	358	366	Right-handed alpha
Helix 64	AH1	D	6	10	Right-handed alpha
Helix 65	AH2	D	11	13	Right-handed 310
Helix 66	AH3	D	17	25	Right-handed alpha
Helix 67	AH4	D	25	30	Right-handed alpha
Helix 68	AH5	D	33	57	Right-handed alpha
Helix 69	AH6	D	89	96	Right-handed alpha
Helix 70	AH7	D	116	129	Right-handed alpha
Helix 71	AH8	D	191	202	Right-handed alpha
Helix 72	AH9	D	242	253	Right-handed alpha
Helix 73	AI1	D	257	266	Right-handed alpha
Helix 74	AI2	D	274	281	Right-handed alpha
Helix 75	AI3	D	288	292	Right-handed 310
Helix 76	AI4	D	293	304	Right-handed alpha
Helix 77	AI5	D	321	333	Right-handed alpha
Helix 78	AI6	D	389	397	Right-handed alpha
Helix 79	AI7	D	399	404	Right-handed 310
Helix 80	AI8	D	441	495	Right-handed alpha
Helix 81	AI9	D	501	508	Right-handed alpha
Helix 82	AJ1	D	590	595	Right-handed alpha

There are 22 sheets in PDB entry 9O8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	64	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	59	60	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	221	225	anti-parallel
Strand 3	A	197	201	parallel
Strand 4	A	249	252	parallel
Strand 5	A	286	287	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	169	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	190	193	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	D	99	100	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	166	first strand
Strand 2	B	144	151	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	173	180	anti-parallel
Strand 5	B	74	80	anti-parallel
Strand 6	B	62	68	anti-parallel
Strand 7	B	208	211	parallel
Strand 8	B	217	220	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	D	14	15	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	342	first strand
Strand 2	B	351	361	anti-parallel
Strand 3	B	346	348	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	342	first strand
Strand 2	B	351	361	anti-parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	372	377	parallel
Strand 5	B	380	381	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	516	first strand
Strand 2	B	528	532	anti-parallel
Strand 3	B	582	584	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	587	588	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	544	first strand
Strand 2	B	572	573	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	64	66	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	57	60	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	150	152	anti-parallel
Strand 3	C	221	225	anti-parallel
Strand 4	C	197	201	parallel
Strand 5	C	249	252	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	168	169	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	339	340	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	166	first strand
Strand 2	D	144	152	anti-parallel
Strand 3	D	132	137	anti-parallel
Strand 4	D	173	181	anti-parallel
Strand 5	D	73	80	anti-parallel
Strand 6	D	61	68	anti-parallel
Strand 7	D	207	211	parallel
Strand 8	D	217	220	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	351	361	anti-parallel
Strand 3	D	346	348	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	351	361	anti-parallel
Strand 3	D	417	425	anti-parallel
Strand 4	D	372	377	parallel
Strand 5	D	380	381	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	519	first strand
Strand 2	D	524	530	anti-parallel
Strand 3	D	582	588	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	545	546	first strand
Strand 2	D	570	571	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O8P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8P