Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O8U entry

There are 6 chains in PDB entry 9O8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 15GLY 839
B
 SER 2LYS 119
C
 SER 2ASN 54
D
 MET 1ALA 69
E
 SER 36ILE 677
F
 THR 3GLU 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 9O8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
36 45Right-handed alpha
Helix 4
AA4
A
64 77Right-handed alpha
Helix 5
AA5
A
81 97Right-handed alpha
Helix 6
AA6
A
125 135Right-handed alpha
Helix 7
AA7
A
142 158Right-handed alpha
Helix 8
AA8
A
161 170Right-handed alpha
Helix 9
AA9
A
171 179Right-handed alpha
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
208 229Right-handed alpha
Helix 12
AB3
A
232 236Right-handed 310
Helix 13
AB4
A
237 273Right-handed alpha
Helix 14
AB5
A
275 292Right-handed alpha
Helix 15
AB6
A
299 318Right-handed alpha
Helix 16
AB7
A
326 331Right-handed alpha
Helix 17
AB8
A
331 340Right-handed alpha
Helix 18
AB9
A
346 363Right-handed alpha
Helix 19
AC1
A
369 376Right-handed alpha
Helix 20
AC2
A
399 413Right-handed alpha
Helix 21
AC3
A
428 441Right-handed alpha
Helix 22
AC4
A
451 463Right-handed alpha
Helix 23
AC5
A
465 470Right-handed alpha
Helix 24
AC6
A
492 496Right-handed 310
Helix 25
AC7
A
500 508Right-handed alpha
Helix 26
AC8
A
532 566Right-handed alpha
Helix 27
AC9
A
568 574Right-handed alpha
Helix 28
AD1
A
575 582Right-handed alpha
Helix 29
AD2
A
601 616Right-handed alpha
Helix 30
AD3
A
623 633Right-handed alpha
Helix 31
AD4
A
638 648Right-handed alpha
Helix 32
AD5
A
656 677Right-handed alpha
Helix 33
AD6
A
693 698Right-handed alpha
Helix 34
AD7
A
730 740Right-handed alpha
Helix 35
AD8
A
757 762Right-handed alpha
Helix 36
AD9
A
765 780Right-handed alpha
Helix 37
AE1
A
791 801Right-handed alpha
Helix 38
AE2
A
823 832Right-handed alpha
Helix 39
AE3
B
3 15Right-handed alpha
Helix 40
AE4
B
18 23Right-handed alpha
Helix 41
AE5
B
24 26Right-handed 310
Helix 42
AE6
B
31 35Right-handed 310
Helix 43
AE7
B
112 117Right-handed 310
Helix 44
AE8
C
3 7Right-handed 310
Helix 45
AE9
E
37 45Right-handed alpha
Helix 46
AF1
E
64 77Right-handed alpha
Helix 47
AF2
E
81 97Right-handed alpha
Helix 48
AF3
E
125 135Right-handed alpha
Helix 49
AF4
E
142 158Right-handed alpha
Helix 50
AF5
E
161 170Right-handed alpha
Helix 51
AF6
E
171 181Right-handed alpha
Helix 52
AF7
E
198 203Right-handed alpha
Helix 53
AF8
E
208 228Right-handed alpha
Helix 54
AF9
E
237 273Right-handed alpha
Helix 55
AG1
E
275 292Right-handed alpha
Helix 56
AG2
E
299 316Right-handed alpha
Helix 57
AG3
E
326 331Right-handed alpha
Helix 58
AG4
E
331 340Right-handed alpha
Helix 59
AG5
E
346 363Right-handed alpha
Helix 60
AG6
E
369 374Right-handed alpha
Helix 61
AG7
E
399 413Right-handed alpha
Helix 62
AG8
E
428 441Right-handed alpha
Helix 63
AG9
E
451 462Right-handed alpha
Helix 64
AH1
E
465 471Right-handed alpha
Helix 65
AH2
E
501 509Right-handed alpha
Helix 66
AH3
E
532 566Right-handed alpha
Helix 67
AH4
E
568 574Right-handed alpha
Helix 68
AH5
E
575 582Right-handed alpha
Helix 69
AH6
E
601 616Right-handed alpha
Helix 70
AH7
E
623 633Right-handed alpha
Helix 71
AH8
E
638 648Right-handed alpha
Helix 72
AH9
E
656 677Right-handed alpha
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There are 17 sheets in PDB entry 9O8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
55 56anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
117 118parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
C
32 39anti-parallel
Strand 3
C
20 27anti-parallel
Strand 4
C
10 12anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 388first strand
Strand 2
A
417 423parallel
Strand 3
A
447 450parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
480 482anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
597 600parallel
Strand 3
A
687 689parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 811first strand
Strand 2
A
816 818anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
49 55anti-parallel
Strand 3
B
74 75anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
28 31anti-parallel
Strand 3
D
38 42anti-parallel
Strand 4
D
47 51anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 62first strand
Strand 2
E
117 118parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 102first strand
Strand 2
F
32 39anti-parallel
Strand 3
F
20 27anti-parallel
Strand 4
F
10 12anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
194 195first strand
Strand 2
E
491 492anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
386 388first strand
Strand 2
E
420 423parallel
Strand 3
E
449 450parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
472 476first strand
Strand 2
E
479 482anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
497 499first strand
Strand 2
E
598 600parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
512 513first strand
Strand 2
E
518 519anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il