Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O8Z entry

There are 6 chains in PDB entry 9O8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	MET 368
B	ILE 5	GLU 609
C	ARG 10	MET 368
D	ILE 5	ILE 607
F	T 1	A 74
H	T 1	A 74

There are 84 helices in PDB entry 9O8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	31	Right-handed alpha
Helix 2	AA2	A	71	91	Right-handed alpha
Helix 3	AA3	A	91	96	Right-handed alpha
Helix 4	AA4	A	101	108	Right-handed alpha
Helix 5	AA5	A	109	111	Right-handed 310
Helix 6	AA6	A	118	120	Right-handed 310
Helix 7	AA7	A	121	134	Right-handed alpha
Helix 8	AA8	A	136	140	Right-handed 310
Helix 9	AA9	A	169	174	Right-handed alpha
Helix 10	AB1	A	184	188	Right-handed 310
Helix 11	AB2	A	203	214	Right-handed alpha
Helix 12	AB3	A	231	245	Right-handed alpha
Helix 13	AB4	A	256	268	Right-handed alpha
Helix 14	AB5	A	276	280	Right-handed 310
Helix 15	AB6	A	293	298	Right-handed alpha
Helix 16	AB7	A	306	319	Right-handed alpha
Helix 17	AB8	A	324	338	Right-handed alpha
Helix 18	AB9	A	342	350	Right-handed 310
Helix 19	AC1	A	352	357	Right-handed alpha
Helix 20	AC2	A	357	366	Right-handed alpha
Helix 21	AC3	B	6	13	Right-handed alpha
Helix 22	AC4	B	17	24	Right-handed alpha
Helix 23	AC5	B	25	29	Right-handed 310
Helix 24	AC6	B	33	57	Right-handed alpha
Helix 25	AC7	B	89	95	Right-handed alpha
Helix 26	AC8	B	116	120	Right-handed 310
Helix 27	AC9	B	123	129	Right-handed alpha
Helix 28	AD1	B	191	202	Right-handed alpha
Helix 29	AD2	B	242	252	Right-handed alpha
Helix 30	AD3	B	257	263	Right-handed alpha
Helix 31	AD4	B	271	281	Right-handed alpha
Helix 32	AD5	B	284	288	Right-handed 310
Helix 33	AD6	B	294	307	Right-handed alpha
Helix 34	AD7	B	313	317	Right-handed 310
Helix 35	AD8	B	321	333	Right-handed alpha
Helix 36	AD9	B	385	388	Right-handed 310
Helix 37	AE1	B	389	398	Right-handed alpha
Helix 38	AE2	B	399	404	Right-handed 310
Helix 39	AE3	B	441	481	Right-handed alpha
Helix 40	AE4	B	481	495	Right-handed alpha
Helix 41	AE5	B	501	510	Right-handed alpha
Helix 42	AE6	C	12	32	Right-handed alpha
Helix 43	AE7	C	45	47	Right-handed 310
Helix 44	AE8	C	52	56	Right-handed 310
Helix 45	AE9	C	71	90	Right-handed alpha
Helix 46	AF1	C	91	96	Right-handed alpha
Helix 47	AF2	C	100	108	Right-handed alpha
Helix 48	AF3	C	111	115	Right-handed 310
Helix 49	AF4	C	118	134	Right-handed alpha
Helix 50	AF5	C	137	141	Right-handed 310
Helix 51	AF6	C	169	174	Right-handed alpha
Helix 52	AF7	C	203	211	Right-handed alpha
Helix 53	AF8	C	214	220	Right-handed alpha
Helix 54	AF9	C	231	245	Right-handed alpha
Helix 55	AG1	C	256	268	Right-handed alpha
Helix 56	AG2	C	270	275	Right-handed 310
Helix 57	AG3	C	276	281	Right-handed alpha
Helix 58	AG4	C	293	298	Right-handed alpha
Helix 59	AG5	C	306	317	Right-handed alpha
Helix 60	AG6	C	324	338	Right-handed alpha
Helix 61	AG7	C	342	350	Right-handed 310
Helix 62	AG8	C	352	357	Right-handed alpha
Helix 63	AG9	C	357	366	Right-handed alpha
Helix 64	AH1	D	6	10	Right-handed alpha
Helix 65	AH2	D	17	25	Right-handed alpha
Helix 66	AH3	D	26	30	Right-handed 310
Helix 67	AH4	D	35	54	Right-handed alpha
Helix 68	AH5	D	55	57	Right-handed 310
Helix 69	AH6	D	89	96	Right-handed alpha
Helix 70	AH7	D	115	129	Right-handed alpha
Helix 71	AH8	D	191	203	Right-handed alpha
Helix 72	AH9	D	242	253	Right-handed alpha
Helix 73	AI1	D	258	262	Right-handed 310
Helix 74	AI2	D	270	281	Right-handed alpha
Helix 75	AI3	D	288	292	Right-handed 310
Helix 76	AI4	D	293	303	Right-handed alpha
Helix 77	AI5	D	321	333	Right-handed alpha
Helix 78	AI6	D	389	398	Right-handed alpha
Helix 79	AI7	D	399	404	Right-handed 310
Helix 80	AI8	D	441	462	Right-handed alpha
Helix 81	AI9	D	476	494	Right-handed alpha
Helix 82	AJ1	D	500	509	Right-handed alpha
Helix 83	AJ2	D	594	598	Right-handed 310
Helix 84	AJ3	D	600	605	Right-handed alpha

There are 21 sheets in PDB entry 9O8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	64	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	57	60	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	142	143	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	150	151	anti-parallel
Strand 3	A	221	225	anti-parallel
Strand 4	A	197	201	parallel
Strand 5	A	249	252	parallel
Strand 6	A	286	288	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	189	192	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	339	340	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	D	99	100	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	165	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	173	180	anti-parallel
Strand 5	B	74	80	anti-parallel
Strand 6	B	62	68	anti-parallel
Strand 7	B	208	211	parallel
Strand 8	B	217	220	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	D	14	15	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	342	first strand
Strand 2	B	351	361	anti-parallel
Strand 3	B	346	348	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	342	first strand
Strand 2	B	351	361	anti-parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	372	377	parallel
Strand 5	B	380	381	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	520	first strand
Strand 2	B	524	532	anti-parallel
Strand 3	B	582	585	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	64	66	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	59	60	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	150	152	anti-parallel
Strand 3	C	221	225	anti-parallel
Strand 4	C	197	201	parallel
Strand 5	C	249	252	parallel
Strand 6	C	286	287	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	188	190	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	339	340	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	162	first strand
Strand 2	D	148	152	anti-parallel
Strand 3	D	132	137	anti-parallel
Strand 4	D	173	181	anti-parallel
Strand 5	D	73	80	anti-parallel
Strand 6	D	62	68	anti-parallel
Strand 7	D	208	211	parallel
Strand 8	D	217	220	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	351	361	anti-parallel
Strand 3	D	346	348	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	351	361	anti-parallel
Strand 3	D	418	425	anti-parallel
Strand 4	D	372	377	parallel
Strand 5	D	380	381	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	520	first strand
Strand 2	D	524	529	anti-parallel
Strand 3	D	584	588	anti-parallel
Strand 4	D	552	553	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O8Z