Analysis of interatomic Contacts of Structural Units in PDB entry:
9O94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O94 entry

There are 3 chains in PDB entry 9O94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 173PRO 743
B
 MET 138GLN 681
F
 UNK 0UNK 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 9O94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 179Right-handed alpha
Helix 2
AA2
A
180 182Right-handed 310
Helix 3
AA3
A
183 203Right-handed alpha
Helix 4
AA4
A
224 270Right-handed alpha
Helix 5
AA5
A
271 273Right-handed 310
Helix 6
AA6
A
274 279Right-handed alpha
Helix 7
AA7
A
280 290Right-handed alpha
Helix 8
AA8
A
290 324Right-handed alpha
Helix 9
AA9
A
325 335Right-handed alpha
Helix 10
AB1
A
336 338Right-handed 310
Helix 11
AB2
A
339 346Right-handed alpha
Helix 12
AB3
A
346 372Right-handed alpha
Helix 13
AB4
A
373 380Right-handed alpha
Helix 14
AB5
A
382 434Right-handed alpha
Helix 15
AB6
A
440 475Right-handed alpha
Helix 16
AB7
A
475 484Right-handed alpha
Helix 17
AB8
A
543 552Right-handed alpha
Helix 18
AB9
A
570 572Right-handed 310
Helix 19
AC1
A
573 580Right-handed alpha
Helix 20
AC2
A
594 600Right-handed alpha
Helix 21
AC3
A
608 619Right-handed alpha
Helix 22
AC4
A
621 626Right-handed alpha
Helix 23
AC5
A
630 634Right-handed 310
Helix 24
AC6
A
644 658Right-handed alpha
Helix 25
AC7
A
674 687Right-handed alpha
Helix 26
AC8
A
690 694Right-handed 310
Helix 27
AC9
A
702 707Right-handed 310
Helix 28
AD1
A
725 733Right-handed alpha
Helix 29
AD2
A
734 741Right-handed alpha
Helix 30
AD3
B
139 146Right-handed alpha
Helix 31
AD4
B
148 167Right-handed alpha
Helix 32
AD5
B
168 181Right-handed alpha
Helix 33
AD6
B
185 235Right-handed alpha
Helix 34
AD7
B
239 244Right-handed alpha
Helix 35
AD8
B
245 262Right-handed alpha
Helix 36
AD9
B
267 274Right-handed alpha
Helix 37
AE1
B
274 289Right-handed alpha
Helix 38
AE2
B
289 298Right-handed alpha
Helix 39
AE3
B
302 338Right-handed alpha
Helix 40
AE4
B
338 346Right-handed alpha
Helix 41
AE5
B
347 398Right-handed alpha
Helix 42
AE6
B
408 440Right-handed alpha
Helix 43
AE7
B
440 449Right-handed alpha
Helix 44
AE8
B
508 517Right-handed alpha
Helix 45
AE9
B
535 537Right-handed 310
Helix 46
AF1
B
538 545Right-handed alpha
Helix 47
AF2
B
560 564Right-handed alpha
Helix 48
AF3
B
572 583Right-handed alpha
Helix 49
AF4
B
585 592Right-handed alpha
Helix 50
AF5
B
594 597Right-handed 310
Helix 51
AF6
B
601 605Right-handed 310
Helix 52
AF7
B
608 622Right-handed alpha
Helix 53
AF8
B
638 645Right-handed alpha
Helix 54
AF9
B
662 666Right-handed 310
Helix 55
AG1
F
2 7Right-handed 310
Helix 56
AG2
F
8 14Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9O94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
527 528anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 583first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 493first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 559first strand
Strand 2
B
599 600anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il