Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O9D entry

There are 3 chains in PDB entry 9O9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 173PRO 743
B
 MET 138GLN 681
D
 SER 50ALA 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9O9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 182Right-handed 310
Helix 2
AA2
A
183 217Right-handed alpha
Helix 3
AA3
A
220 269Right-handed alpha
Helix 4
AA4
A
270 271Right-handed 310
Helix 5
AA5
A
272 273Right-handed 310
Helix 6
AA6
A
274 279Right-handed alpha
Helix 7
AA7
A
280 290Right-handed alpha
Helix 8
AA8
A
290 324Right-handed alpha
Helix 9
AA9
A
324 335Right-handed alpha
Helix 10
AB1
A
336 338Right-handed 310
Helix 11
AB2
A
339 372Right-handed alpha
Helix 12
AB3
A
373 380Right-handed alpha
Helix 13
AB4
A
382 436Right-handed alpha
Helix 14
AB5
A
440 475Right-handed alpha
Helix 15
AB6
A
475 484Right-handed alpha
Helix 16
AB7
A
543 552Right-handed alpha
Helix 17
AB8
A
570 572Right-handed 310
Helix 18
AB9
A
573 580Right-handed alpha
Helix 19
AC1
A
594 600Right-handed alpha
Helix 20
AC2
A
608 619Right-handed alpha
Helix 21
AC3
A
621 626Right-handed alpha
Helix 22
AC4
A
630 634Right-handed 310
Helix 23
AC5
A
644 658Right-handed alpha
Helix 24
AC6
A
674 687Right-handed alpha
Helix 25
AC7
A
690 694Right-handed 310
Helix 26
AC8
A
702 706Right-handed 310
Helix 27
AC9
A
725 732Right-handed alpha
Helix 28
AD1
A
734 741Right-handed alpha
Helix 29
AD2
B
139 146Right-handed alpha
Helix 30
AD3
B
148 167Right-handed alpha
Helix 31
AD4
B
168 181Right-handed alpha
Helix 32
AD5
B
185 234Right-handed alpha
Helix 33
AD6
B
237 244Right-handed alpha
Helix 34
AD7
B
245 255Right-handed alpha
Helix 35
AD8
B
255 262Right-handed alpha
Helix 36
AD9
B
264 285Right-handed alpha
Helix 37
AE1
B
288 299Right-handed alpha
Helix 38
AE2
B
303 338Right-handed alpha
Helix 39
AE3
B
338 346Right-handed alpha
Helix 40
AE4
B
347 401Right-handed alpha
Helix 41
AE5
B
405 439Right-handed alpha
Helix 42
AE6
B
440 449Right-handed alpha
Helix 43
AE7
B
508 517Right-handed alpha
Helix 44
AE8
B
533 537Right-handed 310
Helix 45
AE9
B
538 545Right-handed alpha
Helix 46
AF1
B
560 564Right-handed alpha
Helix 47
AF2
B
572 583Right-handed alpha
Helix 48
AF3
B
585 592Right-handed alpha
Helix 49
AF4
B
594 597Right-handed 310
Helix 50
AF5
B
601 605Right-handed 310
Helix 51
AF6
B
608 623Right-handed alpha
Helix 52
AF7
B
638 645Right-handed alpha
Helix 53
AF8
D
53 74Right-handed alpha
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There are 6 sheets in PDB entry 9O9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
527 528anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 583first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 493first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 681anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 559first strand
Strand 2
B
599 600anti-parallel
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