Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O9L entry

There are 5 chains in PDB entry 9O9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 172	GLY 311
C	LEU 172	GLY 311
D	LEU 172	GLU 650
A	LEU 172	THR 652
E	A 1	A 2

There are 46 helices in PDB entry 9O9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	183	188	Right-handed alpha
Helix 2	AA2	B	192	213	Right-handed alpha
Helix 3	AA3	B	232	240	Right-handed alpha
Helix 4	AA4	B	243	256	Right-handed alpha
Helix 5	AA5	B	272	290	Right-handed alpha
Helix 6	AA6	C	184	190	Right-handed alpha
Helix 7	AA7	C	192	214	Right-handed alpha
Helix 8	AA8	C	231	241	Right-handed alpha
Helix 9	AA9	C	244	255	Right-handed alpha
Helix 10	AB1	C	272	291	Right-handed alpha
Helix 11	AB2	D	183	188	Right-handed alpha
Helix 12	AB3	D	192	215	Right-handed alpha
Helix 13	AB4	D	231	241	Right-handed alpha
Helix 14	AB5	D	243	256	Right-handed alpha
Helix 15	AB6	D	272	290	Right-handed alpha
Helix 16	AB7	D	321	337	Right-handed alpha
Helix 17	AB8	D	350	366	Right-handed alpha
Helix 18	AB9	D	382	396	Right-handed alpha
Helix 19	AC1	D	403	408	Right-handed alpha
Helix 20	AC2	D	429	436	Right-handed alpha
Helix 21	AC3	D	466	478	Right-handed alpha
Helix 22	AC4	D	485	501	Right-handed alpha
Helix 23	AC5	D	509	522	Right-handed alpha
Helix 24	AC6	D	524	533	Right-handed alpha
Helix 25	AC7	D	535	549	Right-handed alpha
Helix 26	AC8	D	568	581	Right-handed alpha
Helix 27	AC9	D	610	619	Right-handed alpha
Helix 28	AD1	D	635	648	Right-handed alpha
Helix 29	AD2	A	192	212	Right-handed alpha
Helix 30	AD3	A	232	241	Right-handed alpha
Helix 31	AD4	A	243	256	Right-handed alpha
Helix 32	AD5	A	273	291	Right-handed alpha
Helix 33	AD6	A	321	337	Right-handed alpha
Helix 34	AD7	A	350	368	Right-handed alpha
Helix 35	AD8	A	382	396	Right-handed alpha
Helix 36	AD9	A	403	410	Right-handed alpha
Helix 37	AE1	A	423	427	Right-handed 310
Helix 38	AE2	A	429	436	Right-handed alpha
Helix 39	AE3	A	466	479	Right-handed alpha
Helix 40	AE4	A	485	501	Right-handed alpha
Helix 41	AE5	A	508	522	Right-handed alpha
Helix 42	AE6	A	524	532	Right-handed alpha
Helix 43	AE7	A	535	549	Right-handed alpha
Helix 44	AE8	A	568	581	Right-handed alpha
Helix 45	AE9	A	610	616	Right-handed alpha
Helix 46	AF1	A	636	652	Right-handed alpha

There are 10 sheets in PDB entry 9O9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	222	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	174	182	anti-parallel
Strand 4	B	261	268	anti-parallel
Strand 5	B	295	298	parallel
Strand 6	B	307	309	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	225	230	anti-parallel
Strand 3	C	175	182	anti-parallel
Strand 4	C	261	268	anti-parallel
Strand 5	C	295	299	parallel
Strand 6	C	307	309	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	222	first strand
Strand 2	D	225	230	anti-parallel
Strand 3	D	175	182	anti-parallel
Strand 4	D	261	268	anti-parallel
Strand 5	D	294	299	parallel
Strand 6	D	309	310	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	402	first strand
Strand 2	D	372	376	parallel
Strand 3	D	340	344	parallel
Strand 4	D	414	419	parallel
Strand 5	D	438	443	parallel
Strand 6	D	455	460	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	553	first strand
Strand 2	D	556	560	anti-parallel
Strand 3	D	587	593	parallel
Strand 4	D	599	605	anti-parallel
Strand 5	D	626	631	anti-parallel
Strand 6	D	620	623	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	174	182	anti-parallel
Strand 4	A	261	268	anti-parallel
Strand 5	A	295	298	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	414	419	parallel
Strand 3	A	439	442	parallel
Strand 4	A	458	459	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	401	402	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	587	590	parallel
Strand 3	A	604	605	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	601	first strand
Strand 2	A	627	630	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9L