Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O9M entry

There are 6 chains in PDB entry 9O9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	MET 368
B	ILE 5	GLU 609
C	ARG 10	MET 368
D	ILE 5	ILE 607
F	A 1	T 74
H	A 1	T 74

There are 77 helices in PDB entry 9O9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	32	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	67	70	Right-handed 310
Helix 4	AA4	A	71	91	Right-handed alpha
Helix 5	AA5	A	100	108	Right-handed alpha
Helix 6	AA6	A	109	111	Right-handed 310
Helix 7	AA7	A	118	134	Right-handed alpha
Helix 8	AA8	A	170	174	Right-handed alpha
Helix 9	AA9	A	184	188	Right-handed 310
Helix 10	AB1	A	203	213	Right-handed alpha
Helix 11	AB2	A	214	219	Right-handed alpha
Helix 12	AB3	A	231	243	Right-handed alpha
Helix 13	AB4	A	256	269	Right-handed alpha
Helix 14	AB5	A	276	281	Right-handed alpha
Helix 15	AB6	A	291	299	Right-handed alpha
Helix 16	AB7	A	306	319	Right-handed alpha
Helix 17	AB8	A	320	323	Right-handed 310
Helix 18	AB9	A	324	338	Right-handed alpha
Helix 19	AC1	A	342	350	Right-handed alpha
Helix 20	AC2	A	352	367	Right-handed alpha
Helix 21	AC3	B	6	13	Right-handed alpha
Helix 22	AC4	B	17	25	Right-handed alpha
Helix 23	AC5	B	25	30	Right-handed alpha
Helix 24	AC6	B	33	57	Right-handed alpha
Helix 25	AC7	B	89	96	Right-handed alpha
Helix 26	AC8	B	115	129	Right-handed alpha
Helix 27	AC9	B	191	203	Right-handed alpha
Helix 28	AD1	B	242	253	Right-handed alpha
Helix 29	AD2	B	258	265	Right-handed alpha
Helix 30	AD3	B	273	282	Right-handed alpha
Helix 31	AD4	B	284	288	Right-handed 310
Helix 32	AD5	B	296	305	Right-handed alpha
Helix 33	AD6	B	321	333	Right-handed alpha
Helix 34	AD7	B	385	388	Right-handed 310
Helix 35	AD8	B	389	398	Right-handed alpha
Helix 36	AD9	B	399	403	Right-handed 310
Helix 37	AE1	B	441	481	Right-handed alpha
Helix 38	AE2	B	481	495	Right-handed alpha
Helix 39	AE3	B	500	509	Right-handed alpha
Helix 40	AE4	B	593	598	Right-handed 310
Helix 41	AE5	C	11	33	Right-handed alpha
Helix 42	AE6	C	45	47	Right-handed 310
Helix 43	AE7	C	71	92	Right-handed alpha
Helix 44	AE8	C	100	110	Right-handed alpha
Helix 45	AE9	C	119	134	Right-handed alpha
Helix 46	AF1	C	136	141	Right-handed alpha
Helix 47	AF2	C	184	188	Right-handed 310
Helix 48	AF3	C	203	214	Right-handed alpha
Helix 49	AF4	C	215	220	Right-handed alpha
Helix 50	AF5	C	231	245	Right-handed alpha
Helix 51	AF6	C	256	268	Right-handed alpha
Helix 52	AF7	C	273	281	Right-handed alpha
Helix 53	AF8	C	291	299	Right-handed alpha
Helix 54	AF9	C	306	319	Right-handed alpha
Helix 55	AG1	C	324	338	Right-handed alpha
Helix 56	AG2	C	342	349	Right-handed alpha
Helix 57	AG3	C	352	357	Right-handed alpha
Helix 58	AG4	C	357	367	Right-handed alpha
Helix 59	AG5	D	6	13	Right-handed alpha
Helix 60	AG6	D	17	25	Right-handed alpha
Helix 61	AG7	D	26	30	Right-handed 310
Helix 62	AG8	D	33	57	Right-handed alpha
Helix 63	AG9	D	88	95	Right-handed alpha
Helix 64	AH1	D	100	104	Right-handed 310
Helix 65	AH2	D	115	129	Right-handed alpha
Helix 66	AH3	D	191	203	Right-handed alpha
Helix 67	AH4	D	242	253	Right-handed alpha
Helix 68	AH5	D	257	266	Right-handed alpha
Helix 69	AH6	D	270	282	Right-handed alpha
Helix 70	AH7	D	288	292	Right-handed 310
Helix 71	AH8	D	293	307	Right-handed alpha
Helix 72	AH9	D	313	317	Right-handed 310
Helix 73	AI1	D	321	333	Right-handed alpha
Helix 74	AI2	D	389	398	Right-handed alpha
Helix 75	AI3	D	441	494	Right-handed alpha
Helix 76	AI4	D	501	510	Right-handed alpha
Helix 77	AI5	D	576	580	Right-handed 310

There are 16 sheets in PDB entry 9O9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	58	60	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	221	225	anti-parallel
Strand 3	A	197	200	parallel
Strand 4	A	249	251	parallel
Strand 5	A	285	287	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	189	193	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	166	first strand
Strand 2	B	144	151	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	173	180	anti-parallel
Strand 5	B	74	80	anti-parallel
Strand 6	B	62	68	anti-parallel
Strand 7	B	208	211	parallel
Strand 8	B	217	220	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	353	361	anti-parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	372	375	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	520	first strand
Strand 2	B	524	532	anti-parallel
Strand 3	B	581	588	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	548	first strand
Strand 2	B	568	575	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	64	66	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	58	60	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	150	152	anti-parallel
Strand 3	C	221	225	anti-parallel
Strand 4	C	197	201	parallel
Strand 5	C	249	252	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	168	169	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	339	341	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	166	first strand
Strand 2	D	144	152	anti-parallel
Strand 3	D	132	137	anti-parallel
Strand 4	D	173	181	anti-parallel
Strand 5	D	73	79	anti-parallel
Strand 6	D	61	68	anti-parallel
Strand 7	D	207	211	parallel
Strand 8	D	217	220	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	355	361	anti-parallel
Strand 3	D	418	423	anti-parallel
Strand 4	D	373	377	parallel
Strand 5	D	380	382	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	352	353	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	520	first strand
Strand 2	D	524	530	anti-parallel
Strand 3	D	582	588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9M