Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O9T entry

There are 2 chains in PDB entry 9O9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 40ASN 281
A
 SER 24GLN 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9O9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
43 61Right-handed alpha
Helix 2
AA2
B
62 67Right-handed 310
Helix 3
AA3
B
68 85Right-handed alpha
Helix 4
AA4
B
93 137Right-handed alpha
Helix 5
AA5
B
138 149Right-handed alpha
Helix 6
AA6
B
161 170Right-handed alpha
Helix 7
AA7
B
171 181Right-handed alpha
Helix 8
AA8
B
194 202Right-handed alpha
Helix 9
AA9
B
204 214Right-handed alpha
Helix 10
AB1
B
227 236Right-handed alpha
Helix 11
AB2
B
237 247Right-handed alpha
Helix 12
AB3
B
260 269Right-handed alpha
Helix 13
AB4
B
270 281Right-handed alpha
Helix 14
AB5
A
25 45Right-handed alpha
Helix 15
AB6
A
52 73Right-handed alpha
Helix 16
AB7
A
77 94Right-handed alpha
Helix 17
AB8
A
138 153Right-handed alpha
Helix 18
AB9
A
164 174Right-handed alpha
Helix 19
AC1
A
188 195Right-handed alpha
Helix 20
AC2
A
204 211Right-handed alpha
Helix 21
AC3
A
212 218Right-handed alpha
Helix 22
AC4
A
252 263Right-handed alpha
Helix 23
AC5
A
275 287Right-handed alpha
Helix 24
AC6
A
303 306Right-handed 310
Helix 25
AC7
A
307 323Right-handed alpha
Helix 26
AC8
A
331 341Right-handed alpha
Helix 27
AC9
A
350 352Right-handed 310
Helix 28
AD1
A
353 360Right-handed alpha
Helix 29
AD2
A
394 405Right-handed alpha
Helix 30
AD3
A
408 419Right-handed alpha
Helix 31
AD4
A
426 435Right-handed alpha
Helix 32
AD5
A
436 449Right-handed alpha
Helix 33
AD6
A
457 474Right-handed alpha
Helix 34
AD7
A
478 487Right-handed alpha
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There are 5 sheets in PDB entry 9O9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
128 132parallel
Strand 3
A
181 185parallel
Strand 4
A
380 388anti-parallel
Strand 5
A
228 233anti-parallel
Strand 6
A
423 424anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
128 132parallel
Strand 3
A
181 185parallel
Strand 4
A
380 388anti-parallel
Strand 5
A
450 451parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
224 225anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
344 349parallel
Strand 3
A
236 240anti-parallel
Strand 4
A
364 367anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
297 298anti-parallel
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