Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O9X entry

There are 4 chains in PDB entry 9O9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 231
C	MET 1	LEU 436
D	MET 1	LEU 436
B	MET 1	VAL 231

There are 46 helices in PDB entry 9O9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	47	57	Right-handed alpha
Helix 3	AA3	A	77	89	Right-handed alpha
Helix 4	AA4	A	103	116	Right-handed alpha
Helix 5	AA5	A	118	134	Right-handed alpha
Helix 6	AA6	A	135	139	Right-handed 310
Helix 7	AA7	A	142	146	Right-handed 310
Helix 8	AA8	A	147	161	Right-handed alpha
Helix 9	AA9	A	177	195	Right-handed alpha
Helix 10	AB1	A	205	210	Right-handed alpha
Helix 11	AB2	C	3	17	Right-handed alpha
Helix 12	AB3	C	17	57	Right-handed alpha
Helix 13	AB4	C	67	71	Right-handed 310
Helix 14	AB5	C	74	78	Right-handed 310
Helix 15	AB6	C	115	121	Right-handed alpha
Helix 16	AB7	C	151	164	Right-handed alpha
Helix 17	AB8	C	233	241	Right-handed alpha
Helix 18	AB9	C	258	268	Right-handed alpha
Helix 19	AC1	C	278	323	Right-handed alpha
Helix 20	AC2	C	323	334	Right-handed alpha
Helix 21	AC3	C	336	382	Right-handed alpha
Helix 22	AC4	C	384	389	Right-handed 310
Helix 23	AC5	C	397	425	Right-handed alpha
Helix 24	AC6	C	427	432	Right-handed alpha
Helix 25	AC7	D	2	16	Right-handed alpha
Helix 26	AC8	D	17	57	Right-handed alpha
Helix 27	AC9	D	74	80	Right-handed alpha
Helix 28	AD1	D	115	121	Right-handed alpha
Helix 29	AD2	D	143	148	Right-handed alpha
Helix 30	AD3	D	150	165	Right-handed alpha
Helix 31	AD4	D	230	232	Right-handed 310
Helix 32	AD5	D	233	240	Right-handed alpha
Helix 33	AD6	D	258	272	Right-handed alpha
Helix 34	AD7	D	278	324	Right-handed alpha
Helix 35	AD8	D	324	334	Right-handed alpha
Helix 36	AD9	D	336	379	Right-handed alpha
Helix 37	AE1	D	399	425	Right-handed alpha
Helix 38	AE2	D	427	433	Right-handed alpha
Helix 39	AE3	B	47	57	Right-handed alpha
Helix 40	AE4	B	77	89	Right-handed alpha
Helix 41	AE5	B	103	116	Right-handed alpha
Helix 42	AE6	B	118	134	Right-handed alpha
Helix 43	AE7	B	142	146	Right-handed 310
Helix 44	AE8	B	147	161	Right-handed alpha
Helix 45	AE9	B	177	195	Right-handed alpha
Helix 46	AF1	B	208	212	Right-handed 310

There are 14 sheets in PDB entry 9O9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	2	8	anti-parallel
Strand 3	A	63	68	anti-parallel
Strand 4	A	71	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	20	23	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	203	first strand
Strand 2	A	37	41	parallel
Strand 3	A	215	219	parallel
Strand 4	A	222	227	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	149	150	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	229	230	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	209	213	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	67	first strand
Strand 2	D	274	277	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	255	256	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	248	250	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	140	first strand
Strand 2	D	209	213	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	206	207	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	63	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	21	23	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	38	41	parallel
Strand 3	B	214	219	parallel
Strand 4	B	222	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O9X