Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OAA entry

There are 5 chains in PDB entry 9OAA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	VAL 50	PHE 922
A	MET 1	SER 86
B	LYS 4	PRO 107
C	MET 1	GLU 89
D	LYS 4	ASP 98

There are 32 helices in PDB entry 9OAA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	T	55	59	Right-handed 310
Helix 2	AA2	T	68	72	Right-handed 310
Helix 3	AA3	T	75	83	Right-handed alpha
Helix 4	AA4	T	175	180	Right-handed alpha
Helix 5	AA5	T	246	251	Right-handed alpha
Helix 6	AA6	T	255	262	Right-handed alpha
Helix 7	AA7	T	287	292	Right-handed alpha
Helix 8	AA8	T	293	312	Right-handed alpha
Helix 9	AA9	T	468	472	Right-handed 310
Helix 10	AB1	T	602	607	Right-handed alpha
Helix 11	AB2	T	676	682	Right-handed alpha
Helix 12	AB3	T	866	870	Right-handed 310
Helix 13	AB4	A	3	19	Right-handed alpha
Helix 14	AB5	A	31	41	Right-handed alpha
Helix 15	AB6	A	43	48	Right-handed alpha
Helix 16	AB7	A	50	59	Right-handed alpha
Helix 17	AB8	A	67	86	Right-handed alpha
Helix 18	AB9	B	6	24	Right-handed alpha
Helix 19	AC1	B	33	44	Right-handed alpha
Helix 20	AC2	B	55	67	Right-handed alpha
Helix 21	AC3	B	75	78	Right-handed 310
Helix 22	AC4	B	79	96	Right-handed alpha
Helix 23	AC5	C	3	17	Right-handed alpha
Helix 24	AC6	C	31	41	Right-handed alpha
Helix 25	AC7	C	43	48	Right-handed alpha
Helix 26	AC8	C	50	59	Right-handed alpha
Helix 27	AC9	C	67	87	Right-handed alpha
Helix 28	AD1	D	6	24	Right-handed alpha
Helix 29	AD2	D	33	45	Right-handed alpha
Helix 30	AD3	D	55	67	Right-handed alpha
Helix 31	AD4	D	75	78	Right-handed 310
Helix 32	AD5	D	79	98	Right-handed alpha

There are 11 sheets in PDB entry 9OAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	62	66	first strand
Strand 2	T	146	153	anti-parallel
Strand 3	T	170	173	anti-parallel
Strand 4	T	113	114	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	87	88	first strand
Strand 2	T	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	123	124	first strand
Strand 2	T	135	136	anti-parallel

Back to list of sheets
Back to top of page

There are 22 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	389	391	first strand
Strand 2	T	363	370	anti-parallel
Strand 3	T	348	353	anti-parallel
Strand 4	T	333	338	anti-parallel
Strand 5	T	220	227	anti-parallel
Strand 6	T	203	210	anti-parallel
Strand 7	T	186	195	anti-parallel
Strand 8	T	913	918	anti-parallel
Strand 9	T	844	849	anti-parallel
Strand 10	T	829	836	anti-parallel
Strand 11	T	776	785	anti-parallel
Strand 12	T	762	771	anti-parallel
Strand 13	T	714	722	anti-parallel
Strand 14	T	697	706	anti-parallel
Strand 15	T	646	657	anti-parallel
Strand 16	T	628	636	anti-parallel
Strand 17	T	589	596	anti-parallel
Strand 18	T	576	581	anti-parallel
Strand 19	T	513	519	anti-parallel
Strand 20	T	495	508	anti-parallel
Strand 21	T	432	446	anti-parallel
Strand 22	T	423	428	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	389	391	first strand
Strand 2	T	363	370	anti-parallel
Strand 3	T	382	386	anti-parallel
Strand 4	T	415	421	anti-parallel
Strand 5	T	432	446	anti-parallel
Strand 6	T	423	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	399	400	first strand
Strand 2	T	403	404	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	524	530	first strand
Strand 2	T	564	570	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	661	663	first strand
Strand 2	T	690	692	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	790	797	first strand
Strand 2	T	816	821	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	65	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	65	66	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OAA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAA