Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OAJ entry

There are 9 chains in PDB entry 9OAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 26	PHE 123
B	MET 518	ASP 664
A	GLU 32	VAL 506
D	LYS 26	PHE 123
E	MET 518	ASP 664
F	GLU 32	VAL 506
G	LYS 26	PHE 123
H	MET 518	ASP 664
I	GLU 32	VAL 506

There are 59 helices in PDB entry 9OAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	83	90	Right-handed 310
Helix 2	AA2	C	100	104	Right-handed 310
Helix 3	AA3	B	523	528	Right-handed 310
Helix 4	AA4	B	529	534	Right-handed alpha
Helix 5	AA5	B	536	543	Right-handed alpha
Helix 6	AA6	B	548	552	Right-handed 310
Helix 7	AA7	B	561	563	Right-handed 310
Helix 8	AA8	B	564	596	Right-handed alpha
Helix 9	AA9	B	618	626	Right-handed alpha
Helix 10	AB1	B	627	635	Right-handed alpha
Helix 11	AB2	B	638	662	Right-handed alpha
Helix 12	AB3	A	70	74	Right-handed alpha
Helix 13	AB4	A	98	117	Right-handed alpha
Helix 14	AB5	A	122	127	Right-handed alpha
Helix 15	AB6	A	335	353	Right-handed alpha
Helix 16	AB7	A	368	373	Right-handed alpha
Helix 17	AB8	A	387	392	Right-handed 310
Helix 18	AB9	A	396	405	Right-handed alpha
Helix 19	AC1	A	475	484	Right-handed alpha
Helix 20	AC2	D	83	90	Right-handed 310
Helix 21	AC3	D	100	104	Right-handed 310
Helix 22	AC4	E	523	528	Right-handed 310
Helix 23	AC5	E	529	534	Right-handed alpha
Helix 24	AC6	E	536	542	Right-handed alpha
Helix 25	AC7	E	543	545	Right-handed 310
Helix 26	AC8	E	546	551	Right-handed alpha
Helix 27	AC9	E	561	563	Right-handed 310
Helix 28	AD1	E	564	596	Right-handed alpha
Helix 29	AD2	E	618	626	Right-handed alpha
Helix 30	AD3	E	627	635	Right-handed alpha
Helix 31	AD4	E	638	662	Right-handed alpha
Helix 32	AD5	F	70	74	Right-handed alpha
Helix 33	AD6	F	98	117	Right-handed alpha
Helix 34	AD7	F	122	127	Right-handed alpha
Helix 35	AD8	F	335	353	Right-handed alpha
Helix 36	AD9	F	368	373	Right-handed alpha
Helix 37	AE1	F	387	390	Right-handed 310
Helix 38	AE2	F	396	405	Right-handed alpha
Helix 39	AE3	F	475	484	Right-handed alpha
Helix 40	AE4	G	83	90	Right-handed 310
Helix 41	AE5	G	100	104	Right-handed 310
Helix 42	AE6	H	523	528	Right-handed 310
Helix 43	AE7	H	529	534	Right-handed alpha
Helix 44	AE8	H	536	542	Right-handed alpha
Helix 45	AE9	H	543	545	Right-handed 310
Helix 46	AF1	H	548	552	Right-handed 310
Helix 47	AF2	H	561	563	Right-handed 310
Helix 48	AF3	H	564	596	Right-handed alpha
Helix 49	AF4	H	618	626	Right-handed alpha
Helix 50	AF5	H	627	635	Right-handed alpha
Helix 51	AF6	H	638	662	Right-handed alpha
Helix 52	AF7	I	70	74	Right-handed alpha
Helix 53	AF8	I	98	117	Right-handed alpha
Helix 54	AF9	I	122	127	Right-handed alpha
Helix 55	AG1	I	335	353	Right-handed alpha
Helix 56	AG2	I	368	373	Right-handed alpha
Helix 57	AG3	I	387	392	Right-handed 310
Helix 58	AG4	I	396	405	Right-handed alpha
Helix 59	AG5	I	475	484	Right-handed alpha

There are 27 sheets in PDB entry 9OAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	32	first strand
Strand 2	C	114	123	parallel
Strand 3	C	105	111	anti-parallel
Strand 4	C	51	54	anti-parallel
Strand 5	C	60	65	anti-parallel
Strand 6	C	68	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	94	96	anti-parallel
Strand 3	C	80	81	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	494	499	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	425	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	444	457	anti-parallel
Strand 3	A	284	297	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	444	457	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	32	first strand
Strand 2	D	114	123	parallel
Strand 3	D	105	111	anti-parallel
Strand 4	D	51	54	anti-parallel
Strand 5	D	60	65	anti-parallel
Strand 6	D	68	71	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	94	96	anti-parallel
Strand 3	D	80	81	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	603	609	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	F	494	499	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	83	86	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	53	56	parallel
Strand 3	F	216	218	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	236	239	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	203	first strand
Strand 2	F	432	435	parallel
Strand 3	F	423	425	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	444	457	anti-parallel
Strand 3	F	284	297	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	420	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	297	anti-parallel
Strand 3	F	444	457	anti-parallel
Strand 4	F	465	470	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	394	395	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	32	first strand
Strand 2	G	114	123	parallel
Strand 3	G	105	111	anti-parallel
Strand 4	G	51	54	anti-parallel
Strand 5	G	60	65	anti-parallel
Strand 6	G	68	71	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	39	first strand
Strand 2	G	94	96	anti-parallel
Strand 3	G	80	81	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	603	609	first strand
Strand 2	I	35	40	anti-parallel
Strand 3	I	494	499	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	486	491	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel
Strand 5	I	83	86	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	76	first strand
Strand 2	I	53	56	parallel
Strand 3	I	216	218	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	94	first strand
Strand 2	I	236	239	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	203	first strand
Strand 2	I	432	435	parallel
Strand 3	I	423	425	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	261	first strand
Strand 2	I	444	457	anti-parallel
Strand 3	I	284	297	anti-parallel
Strand 4	I	330	334	anti-parallel
Strand 5	I	413	420	anti-parallel
Strand 6	I	381	385	anti-parallel
Strand 7	I	374	378	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	297	anti-parallel
Strand 3	I	444	457	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	358	361	parallel
Strand 6	I	394	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAJ