Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OAL entry

There are 3 chains in PDB entry 9OAL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 44	ASN 684
B	THR 44	ASN 684
C	THR 44	ASN 684

There are 39 helices in PDB entry 9OAL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	139	Right-handed alpha
Helix 2	AA2	A	157	161	Right-handed 310
Helix 3	AA3	A	247	249	Right-handed 310
Helix 4	AA4	A	337	341	Right-handed 310
Helix 5	AA5	A	342	357	Right-handed alpha
Helix 6	AA6	A	456	501	Right-handed alpha
Helix 7	AA7	A	501	511	Right-handed alpha
Helix 8	AA8	A	532	536	Right-handed 310
Helix 9	AA9	A	617	619	Right-handed 310
Helix 10	AB1	A	621	628	Right-handed alpha
Helix 11	AB2	A	628	630	Right-handed 310
Helix 12	AB3	A	637	647	Right-handed alpha
Helix 13	AB4	A	656	684	Right-handed alpha
Helix 14	AB5	B	128	139	Right-handed alpha
Helix 15	AB6	B	157	161	Right-handed 310
Helix 16	AB7	B	247	249	Right-handed 310
Helix 17	AB8	B	337	341	Right-handed 310
Helix 18	AB9	B	342	357	Right-handed alpha
Helix 19	AC1	B	456	501	Right-handed alpha
Helix 20	AC2	B	501	511	Right-handed alpha
Helix 21	AC3	B	532	536	Right-handed 310
Helix 22	AC4	B	617	619	Right-handed 310
Helix 23	AC5	B	621	628	Right-handed alpha
Helix 24	AC6	B	628	630	Right-handed 310
Helix 25	AC7	B	637	647	Right-handed alpha
Helix 26	AC8	B	656	684	Right-handed alpha
Helix 27	AC9	C	128	139	Right-handed alpha
Helix 28	AD1	C	157	161	Right-handed 310
Helix 29	AD2	C	247	249	Right-handed 310
Helix 30	AD3	C	337	341	Right-handed 310
Helix 31	AD4	C	342	357	Right-handed alpha
Helix 32	AD5	C	456	501	Right-handed alpha
Helix 33	AD6	C	501	511	Right-handed alpha
Helix 34	AD7	C	532	536	Right-handed 310
Helix 35	AD8	C	617	619	Right-handed 310
Helix 36	AD9	C	621	628	Right-handed alpha
Helix 37	AE1	C	628	630	Right-handed 310
Helix 38	AE2	C	637	647	Right-handed alpha
Helix 39	AE3	C	656	684	Right-handed alpha

There are 30 sheets in PDB entry 9OAL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	529	530	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	523	526	anti-parallel
Strand 3	A	515	517	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	315	319	anti-parallel
Strand 3	A	297	310	anti-parallel
Strand 4	A	78	87	anti-parallel
Strand 5	A	379	387	anti-parallel
Strand 6	A	362	364	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	315	319	anti-parallel
Strand 3	A	297	310	anti-parallel
Strand 4	A	78	87	anti-parallel
Strand 5	A	379	387	anti-parallel
Strand 6	A	370	373	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	92	103	anti-parallel
Strand 3	A	204	215	anti-parallel
Strand 4	A	222	224	anti-parallel
Strand 5	A	229	230	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	179	183	anti-parallel
Strand 3	A	204	215	anti-parallel
Strand 4	A	92	103	anti-parallel
Strand 5	A	283	287	anti-parallel
Strand 6	A	272	278	anti-parallel
Strand 7	A	251	257	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	165	167	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	538	first strand
Strand 2	A	556	560	anti-parallel
Strand 3	A	567	572	anti-parallel
Strand 4	A	578	579	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	552	first strand
Strand 2	A	585	587	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	597	first strand
Strand 2	A	601	606	anti-parallel
Strand 3	A	609	615	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	529	530	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	523	526	anti-parallel
Strand 3	B	515	517	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	315	319	anti-parallel
Strand 3	B	297	310	anti-parallel
Strand 4	B	78	87	anti-parallel
Strand 5	B	379	387	anti-parallel
Strand 6	B	362	364	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	315	319	anti-parallel
Strand 3	B	297	310	anti-parallel
Strand 4	B	78	87	anti-parallel
Strand 5	B	379	387	anti-parallel
Strand 6	B	370	373	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	92	103	anti-parallel
Strand 3	B	204	215	anti-parallel
Strand 4	B	222	224	anti-parallel
Strand 5	B	229	230	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	179	183	anti-parallel
Strand 3	B	204	215	anti-parallel
Strand 4	B	92	103	anti-parallel
Strand 5	B	283	287	anti-parallel
Strand 6	B	272	278	anti-parallel
Strand 7	B	251	257	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	165	167	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	538	first strand
Strand 2	B	556	560	anti-parallel
Strand 3	B	567	572	anti-parallel
Strand 4	B	578	579	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	552	first strand
Strand 2	B	585	587	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	597	first strand
Strand 2	B	601	606	anti-parallel
Strand 3	B	609	615	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	529	530	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	523	526	anti-parallel
Strand 3	C	515	518	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	315	319	anti-parallel
Strand 3	C	297	310	anti-parallel
Strand 4	C	78	87	anti-parallel
Strand 5	C	379	387	anti-parallel
Strand 6	C	362	364	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	315	319	anti-parallel
Strand 3	C	297	310	anti-parallel
Strand 4	C	78	87	anti-parallel
Strand 5	C	379	387	anti-parallel
Strand 6	C	370	373	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	92	103	anti-parallel
Strand 3	C	204	215	anti-parallel
Strand 4	C	222	224	anti-parallel
Strand 5	C	229	230	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	179	183	anti-parallel
Strand 3	C	204	215	anti-parallel
Strand 4	C	92	103	anti-parallel
Strand 5	C	283	287	anti-parallel
Strand 6	C	272	278	anti-parallel
Strand 7	C	251	257	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	C	165	167	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	538	first strand
Strand 2	C	556	560	anti-parallel
Strand 3	C	567	572	anti-parallel
Strand 4	C	578	579	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	552	first strand
Strand 2	C	585	587	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	597	first strand
Strand 2	C	601	606	anti-parallel
Strand 3	C	609	615	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OAL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAL