Analysis of interatomic Contacts of Structural Units in PDB entry:
9OAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OAV entry

There are 3 chains in PDB entry 9OAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 759
T
 A 2 G 19
P
 C 1 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9OAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 46Right-handed 310
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
91 102Right-handed alpha
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
186 202Right-handed alpha
Helix 6
AA6
A
214 227Right-handed alpha
Helix 7
AA7
A
260 266Right-handed alpha
Helix 8
AA8
A
274 284Right-handed alpha
Helix 9
AA9
A
291 302Right-handed alpha
Helix 10
AB1
A
304 338Right-handed alpha
Helix 11
AB2
A
340 347Right-handed alpha
Helix 12
AB3
A
348 364Right-handed alpha
Helix 13
AB4
A
373 382Right-handed alpha
Helix 14
AB5
A
408 417Right-handed alpha
Helix 15
AB6
A
448 470Right-handed alpha
Helix 16
AB7
A
473 498Right-handed alpha
Helix 17
AB8
A
507 532Right-handed alpha
Helix 18
AB9
A
553 572Right-handed alpha
Helix 19
AC1
A
609 613Right-handed 310
Helix 20
AC2
A
617 633Right-handed alpha
Helix 21
AC3
A
636 653Right-handed alpha
Helix 22
AC4
A
657 662Right-handed 310
Helix 23
AC5
A
670 674Right-handed 310
Helix 24
AC6
A
678 691Right-handed alpha
Helix 25
AC7
A
710 714Right-handed alpha
Helix 26
AC8
A
719 721Right-handed 310
Helix 27
AC9
A
729 736Right-handed alpha
Helix 28
AD1
A
738 749Right-handed alpha
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There are 8 sheets in PDB entry 9OAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
13 22anti-parallel
Strand 3
A
25 31anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
106 110anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
62 64anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
167 172parallel
Strand 3
A
157 164anti-parallel
Strand 4
A
137 144anti-parallel
Strand 5
A
205 208parallel
Strand 6
A
256 259parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
247 251anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 541first strand
Strand 2
A
544 548anti-parallel
Strand 3
A
398 406anti-parallel
Strand 4
A
578 591anti-parallel
Strand 5
A
594 599anti-parallel
Strand 6
A
604 607anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 434first strand
Strand 2
A
441 443anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 666first strand
Strand 2
A
699 704anti-parallel
Strand 3
A
715 717anti-parallel
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