Analysis of interatomic Contacts of Structural Units in PDB entry:
9OC4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OC4 entry

There are 5 chains in PDB entry 9OC4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
B
 SER 2LEU 306
B
 LYS 308VAL 682
C
 GLY 3GLU 190
D
 MET 1PHE 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 9OC4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 32Right-handed alpha
Helix 2
AA2
A
39 50Right-handed alpha
Helix 3
AA3
A
58 83Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
132 157Right-handed alpha
Helix 9
AA9
A
165 177Right-handed alpha
Helix 10
AB1
A
177 193Right-handed alpha
Helix 11
AB2
A
218 229Right-handed alpha
Helix 12
AB3
A
238 242Right-handed 310
Helix 13
AB4
A
248 275Right-handed alpha
Helix 14
AB5
A
276 305Right-handed alpha
Helix 15
AB6
A
307 313Right-handed alpha
Helix 16
AB7
A
327 342Right-handed alpha
Helix 17
AB8
A
350 354Right-handed 310
Helix 18
AB9
A
355 368Right-handed alpha
Helix 19
AC1
A
377 398Right-handed alpha
Helix 20
AC2
A
410 437Right-handed alpha
Helix 21
AC3
A
438 444Right-handed alpha
Helix 22
AC4
A
449 465Right-handed alpha
Helix 23
AC5
A
478 509Right-handed alpha
Helix 24
AC6
A
524 549Right-handed alpha
Helix 25
AC7
A
550 557Right-handed alpha
Helix 26
AC8
B
10 24Right-handed alpha
Helix 27
AC9
B
26 31Right-handed alpha
Helix 28
AD1
B
33 55Right-handed alpha
Helix 29
AD2
B
61 99Right-handed alpha
Helix 30
AD3
B
122 126Right-handed 310
Helix 31
AD4
B
198 208Right-handed alpha
Helix 32
AD5
B
215 238Right-handed alpha
Helix 33
AD6
B
238 246Right-handed alpha
Helix 34
AD7
B
251 263Right-handed alpha
Helix 35
AD8
B
264 285Right-handed alpha
Helix 36
AD9
B
291 298Right-handed alpha
Helix 37
AE1
B
329 341Right-handed alpha
Helix 38
AE2
B
346 360Right-handed alpha
Helix 39
AE3
B
366 371Right-handed alpha
Helix 40
AE4
B
397 409Right-handed alpha
Helix 41
AE5
B
413 427Right-handed alpha
Helix 42
AE6
B
452 463Right-handed alpha
Helix 43
AE7
B
474 486Right-handed alpha
Helix 44
AE8
B
495 509Right-handed alpha
Helix 45
AE9
B
519 521Right-handed 310
Helix 46
AF1
B
522 527Right-handed alpha
Helix 47
AF2
B
539 546Right-handed alpha
Helix 48
AF3
B
557 582Right-handed alpha
Helix 49
AF4
B
582 595Right-handed alpha
Helix 50
AF5
B
599 606Right-handed 310
Helix 51
AF6
B
612 631Right-handed alpha
Helix 52
AF7
B
631 638Right-handed alpha
Helix 53
AF8
B
645 657Right-handed alpha
Helix 54
AF9
B
657 679Right-handed alpha
Helix 55
AG1
C
4 21Right-handed alpha
Helix 56
AG2
C
21 34Right-handed alpha
Helix 57
AG3
C
34 39Right-handed alpha
Helix 58
AG4
C
91 109Right-handed alpha
Helix 59
AG5
C
117 122Right-handed 310
Helix 60
AG6
C
133 140Right-handed alpha
Helix 61
AG7
C
140 149Right-handed alpha
Helix 62
AG8
C
151 162Right-handed alpha
Helix 63
AG9
C
178 190Right-handed alpha
Helix 64
AH1
D
2 25Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9OC4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
407 408anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
106 109anti-parallel
Strand 3
B
131 135anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
144 148anti-parallel
Strand 6
B
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
150 154anti-parallel
Strand 3
B
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
548 550anti-parallel
Strand 3
B
531 535parallel
Strand 4
B
512 517parallel
Strand 5
B
301 307parallel
Strand 6
B
466 470parallel
Strand 7
B
489 491parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
438 446anti-parallel
Strand 3
B
323 324anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
438 446anti-parallel
Strand 3
B
429 435anti-parallel
Strand 4
B
393 396anti-parallel
Strand 5
B
383 387anti-parallel
Strand 6
B
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
175 177anti-parallel
Strand 3
C
163 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il