Analysis of interatomic Contacts of Structural Units in PDB entry:
9OC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OC7 entry

There are 6 chains in PDB entry 9OC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	GLY 429	LEU 646
Y	HIS 4	SER 274
Z	ILE 1	MET 99
D	GLY 429	LEU 646
E	HIS 4	LEU 267
F	ILE 1	MET 99

There are 17 helices in PDB entry 9OC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	624	628	Right-handed 310
Helix 2	AA2	Y	49	52	Right-handed 310
Helix 3	AA3	Y	59	83	Right-handed alpha
Helix 4	AA4	Y	131	143	Right-handed alpha
Helix 5	AA5	Y	146	157	Right-handed alpha
Helix 6	AA6	Y	157	170	Right-handed alpha
Helix 7	AA7	Y	170	176	Right-handed alpha
Helix 8	AA8	Y	246	248	Right-handed 310
Helix 9	AA9	D	462	466	Right-handed 310
Helix 10	AB1	D	624	628	Right-handed 310
Helix 11	AB2	E	49	54	Right-handed 310
Helix 12	AB3	E	59	83	Right-handed alpha
Helix 13	AB4	E	131	143	Right-handed alpha
Helix 14	AB5	E	146	157	Right-handed alpha
Helix 15	AB6	E	157	170	Right-handed alpha
Helix 16	AB7	E	170	175	Right-handed alpha
Helix 17	AB8	E	246	248	Right-handed 310

There are 19 sheets in PDB entry 9OC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	476	479	first strand
Strand 2	X	468	473	anti-parallel
Strand 3	X	509	512	anti-parallel
Strand 4	X	515	529	anti-parallel
Strand 5	X	637	643	anti-parallel
Strand 6	X	430	437	anti-parallel
Strand 7	X	482	492	anti-parallel
Strand 8	X	589	599	anti-parallel
Strand 9	X	534	545	anti-parallel
Strand 10	X	515	529	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	452	453	first strand
Strand 2	X	549	556	anti-parallel
Strand 3	X	578	584	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	558	559	first strand
Strand 2	X	571	573	anti-parallel
Strand 3	X	618	619	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	46	47	first strand
Strand 2	Y	33	39	anti-parallel
Strand 3	Y	24	30	anti-parallel
Strand 4	Y	6	14	anti-parallel
Strand 5	Y	89	98	anti-parallel
Strand 6	Y	104	112	anti-parallel
Strand 7	Y	115	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	181	188	first strand
Strand 2	Y	193	203	anti-parallel
Strand 3	Y	234	243	anti-parallel
Strand 4	Y	223	228	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	217	218	first strand
Strand 2	Y	209	214	anti-parallel
Strand 3	Y	250	255	anti-parallel
Strand 4	Y	263	266	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	6	11	first strand
Strand 2	Z	21	30	anti-parallel
Strand 3	Z	62	70	anti-parallel
Strand 4	Z	49	51	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	6	11	first strand
Strand 2	Z	21	30	anti-parallel
Strand 3	Z	62	70	anti-parallel
Strand 4	Z	55	56	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	44	45	first strand
Strand 2	Z	35	41	anti-parallel
Strand 3	Z	78	84	anti-parallel
Strand 4	Z	91	94	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	468	471	anti-parallel
Strand 3	D	509	512	anti-parallel
Strand 4	D	515	528	anti-parallel
Strand 5	D	637	643	anti-parallel
Strand 6	D	430	437	anti-parallel
Strand 7	D	482	492	anti-parallel
Strand 8	D	589	599	anti-parallel
Strand 9	D	534	545	anti-parallel
Strand 10	D	515	528	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	549	556	anti-parallel
Strand 3	D	578	584	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	560	first strand
Strand 2	D	571	573	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	33	39	anti-parallel
Strand 3	E	24	30	anti-parallel
Strand 4	E	6	14	anti-parallel
Strand 5	E	89	98	anti-parallel
Strand 6	E	104	112	anti-parallel
Strand 7	E	115	119	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	188	first strand
Strand 2	E	193	203	anti-parallel
Strand 3	E	234	239	anti-parallel
Strand 4	E	223	228	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	188	first strand
Strand 2	E	193	203	anti-parallel
Strand 3	E	242	243	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	220	first strand
Strand 2	E	208	214	anti-parallel
Strand 3	E	250	256	anti-parallel
Strand 4	E	263	265	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	50	51	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	55	56	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	36	41	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OC7