Analysis of interatomic Contacts of Structural Units in PDB entry:
9OCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OCG entry

There are 3 chains in PDB entry 9OCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 131GLN 681
C
 LEU 5LEU 59
A
 LEU 177GLN 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9OCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
131 145Right-handed alpha
Helix 2
AA2
B
148 181Right-handed alpha
Helix 3
AA3
B
185 234Right-handed alpha
Helix 4
AA4
B
237 244Right-handed alpha
Helix 5
AA5
B
245 255Right-handed alpha
Helix 6
AA6
B
255 262Right-handed alpha
Helix 7
AA7
B
263 289Right-handed alpha
Helix 8
AA8
B
289 298Right-handed alpha
Helix 9
AA9
B
299 338Right-handed alpha
Helix 10
AB1
B
338 346Right-handed alpha
Helix 11
AB2
B
348 402Right-handed alpha
Helix 12
AB3
B
405 437Right-handed alpha
Helix 13
AB4
B
440 448Right-handed alpha
Helix 14
AB5
B
508 517Right-handed alpha
Helix 15
AB6
B
538 546Right-handed alpha
Helix 16
AB7
B
559 564Right-handed alpha
Helix 17
AB8
B
572 583Right-handed alpha
Helix 18
AB9
B
585 591Right-handed alpha
Helix 19
AC1
B
594 598Right-handed 310
Helix 20
AC2
B
601 605Right-handed 310
Helix 21
AC3
B
608 622Right-handed alpha
Helix 22
AC4
B
632 636Right-handed 310
Helix 23
AC5
B
638 650Right-handed alpha
Helix 24
AC6
B
662 669Right-handed alpha
Helix 25
AC7
C
6 11Right-handed alpha
Helix 26
AC8
C
12 14Right-handed 310
Helix 27
AC9
C
35 58Right-handed alpha
Helix 28
AD1
A
183 202Right-handed alpha
Helix 29
AD2
A
202 217Right-handed alpha
Helix 30
AD3
A
220 270Right-handed alpha
Helix 31
AD4
A
272 277Right-handed alpha
Helix 32
AD5
A
278 280Right-handed 310
Helix 33
AD6
A
281 324Right-handed alpha
Helix 34
AD7
A
324 334Right-handed alpha
Helix 35
AD8
A
334 373Right-handed alpha
Helix 36
AD9
A
373 380Right-handed alpha
Helix 37
AE1
A
382 437Right-handed alpha
Helix 38
AE2
A
440 484Right-handed alpha
Helix 39
AE3
A
541 552Right-handed alpha
Helix 40
AE4
A
570 572Right-handed 310
Helix 41
AE5
A
573 580Right-handed alpha
Helix 42
AE6
A
594 599Right-handed alpha
Helix 43
AE7
A
608 619Right-handed alpha
Helix 44
AE8
A
621 626Right-handed alpha
Helix 45
AE9
A
630 634Right-handed 310
Helix 46
AF1
A
637 641Right-handed 310
Helix 47
AF2
A
644 660Right-handed alpha
Helix 48
AF3
A
674 687Right-handed alpha
Helix 49
AF4
A
688 693Right-handed alpha
Helix 50
AF5
A
702 709Right-handed alpha
Helix 51
AF6
A
725 732Right-handed alpha
Helix 52
AF7
A
734 741Right-handed alpha
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There are 5 sheets in PDB entry 9OCG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 493first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 526anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 630first strand
Strand 2
B
655 659parallel
Strand 3
B
498 502parallel
Strand 4
B
673 676parallel
Strand 5
B
679 680anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 528first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 534first strand
Strand 2
A
695 698parallel
Strand 3
A
663 666parallel
Strand 4
A
581 584parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 716first strand
Strand 2
A
719 720anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il