Analysis of interatomic Contacts of Structural Units in PDB entry:
9OCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OCH entry

There are 3 chains in PDB entry 9OCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 134GLN 681
D
 GLN 102ALA 136
A
 PRO 172VAL 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9OCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
134 146Right-handed alpha
Helix 2
AA2
B
148 167Right-handed alpha
Helix 3
AA3
B
168 182Right-handed alpha
Helix 4
AA4
B
185 234Right-handed alpha
Helix 5
AA5
B
239 244Right-handed alpha
Helix 6
AA6
B
245 262Right-handed alpha
Helix 7
AA7
B
263 284Right-handed alpha
Helix 8
AA8
B
285 287Right-handed 310
Helix 9
AA9
B
288 338Right-handed alpha
Helix 10
AB1
B
338 346Right-handed alpha
Helix 11
AB2
B
347 399Right-handed alpha
Helix 12
AB3
B
405 440Right-handed alpha
Helix 13
AB4
B
440 448Right-handed alpha
Helix 14
AB5
B
508 517Right-handed alpha
Helix 15
AB6
B
535 537Right-handed 310
Helix 16
AB7
B
538 545Right-handed alpha
Helix 17
AB8
B
560 565Right-handed alpha
Helix 18
AB9
B
572 583Right-handed alpha
Helix 19
AC1
B
585 590Right-handed alpha
Helix 20
AC2
B
594 597Right-handed 310
Helix 21
AC3
B
601 605Right-handed 310
Helix 22
AC4
B
608 622Right-handed alpha
Helix 23
AC5
B
638 645Right-handed alpha
Helix 24
AC6
B
663 667Right-handed 310
Helix 25
AC7
D
115 119Right-handed 310
Helix 26
AC8
D
124 128Right-handed 310
Helix 27
AC9
D
129 135Right-handed alpha
Helix 28
AD1
A
173 179Right-handed alpha
Helix 29
AD2
A
185 203Right-handed alpha
Helix 30
AD3
A
203 209Right-handed alpha
Helix 31
AD4
A
227 269Right-handed alpha
Helix 32
AD5
A
274 279Right-handed alpha
Helix 33
AD6
A
280 324Right-handed alpha
Helix 34
AD7
A
324 335Right-handed alpha
Helix 35
AD8
A
336 338Right-handed 310
Helix 36
AD9
A
339 373Right-handed alpha
Helix 37
AE1
A
373 381Right-handed alpha
Helix 38
AE2
A
382 434Right-handed alpha
Helix 39
AE3
A
443 475Right-handed alpha
Helix 40
AE4
A
477 482Right-handed alpha
Helix 41
AE5
A
543 552Right-handed alpha
Helix 42
AE6
A
570 572Right-handed 310
Helix 43
AE7
A
573 580Right-handed alpha
Helix 44
AE8
A
594 600Right-handed alpha
Helix 45
AE9
A
608 619Right-handed alpha
Helix 46
AF1
A
621 626Right-handed alpha
Helix 47
AF2
A
630 634Right-handed 310
Helix 48
AF3
A
637 641Right-handed 310
Helix 49
AF4
A
644 658Right-handed alpha
Helix 50
AF5
A
674 687Right-handed alpha
Helix 51
AF6
A
688 694Right-handed 310
Helix 52
AF7
A
725 732Right-handed alpha
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There are 7 sheets in PDB entry 9OCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
492 493anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 660parallel
Strand 4
B
499 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 559first strand
Strand 2
B
599 600anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
503 506anti-parallel
Strand 3
A
561 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
521 524anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 666parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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