Analysis of interatomic Contacts of Structural Units in PDB entry:
9OCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OCI entry

There are 3 chains in PDB entry 9OCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 134GLN 681
D
 ALA 88LEU 158
A
 PRO 172VAL 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9OCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
134 146Right-handed alpha
Helix 2
AA2
B
148 167Right-handed alpha
Helix 3
AA3
B
168 182Right-handed alpha
Helix 4
AA4
B
185 234Right-handed alpha
Helix 5
AA5
B
239 244Right-handed alpha
Helix 6
AA6
B
245 260Right-handed alpha
Helix 7
AA7
B
263 286Right-handed alpha
Helix 8
AA8
B
288 338Right-handed alpha
Helix 9
AA9
B
338 345Right-handed alpha
Helix 10
AB1
B
347 401Right-handed alpha
Helix 11
AB2
B
405 440Right-handed alpha
Helix 12
AB3
B
440 448Right-handed alpha
Helix 13
AB4
B
508 517Right-handed alpha
Helix 14
AB5
B
535 537Right-handed 310
Helix 15
AB6
B
538 545Right-handed alpha
Helix 16
AB7
B
560 564Right-handed alpha
Helix 17
AB8
B
572 583Right-handed alpha
Helix 18
AB9
B
585 590Right-handed alpha
Helix 19
AC1
B
594 597Right-handed 310
Helix 20
AC2
B
601 605Right-handed 310
Helix 21
AC3
B
608 622Right-handed alpha
Helix 22
AC4
B
638 645Right-handed alpha
Helix 23
AC5
B
662 666Right-handed 310
Helix 24
AC6
D
95 98Right-handed 310
Helix 25
AC7
D
119 126Right-handed alpha
Helix 26
AC8
D
129 158Right-handed alpha
Helix 27
AC9
A
173 181Right-handed alpha
Helix 28
AD1
A
183 208Right-handed alpha
Helix 29
AD2
A
225 269Right-handed alpha
Helix 30
AD3
A
270 271Right-handed 310
Helix 31
AD4
A
272 273Right-handed 310
Helix 32
AD5
A
274 279Right-handed alpha
Helix 33
AD6
A
280 290Right-handed alpha
Helix 34
AD7
A
290 324Right-handed alpha
Helix 35
AD8
A
324 335Right-handed alpha
Helix 36
AD9
A
336 338Right-handed 310
Helix 37
AE1
A
339 372Right-handed alpha
Helix 38
AE2
A
373 380Right-handed alpha
Helix 39
AE3
A
382 433Right-handed alpha
Helix 40
AE4
A
443 474Right-handed alpha
Helix 41
AE5
A
475 484Right-handed alpha
Helix 42
AE6
A
543 552Right-handed alpha
Helix 43
AE7
A
570 572Right-handed 310
Helix 44
AE8
A
573 580Right-handed alpha
Helix 45
AE9
A
594 600Right-handed alpha
Helix 46
AF1
A
608 619Right-handed alpha
Helix 47
AF2
A
621 626Right-handed alpha
Helix 48
AF3
A
630 634Right-handed 310
Helix 49
AF4
A
637 641Right-handed 310
Helix 50
AF5
A
646 658Right-handed alpha
Helix 51
AF6
A
674 687Right-handed alpha
Helix 52
AF7
A
688 694Right-handed 310
Helix 53
AF8
A
725 733Right-handed alpha
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There are 7 sheets in PDB entry 9OCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 493first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 660parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 681anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 559first strand
Strand 2
B
599 600anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 101first strand
Strand 2
D
104 105anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
527 528anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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