Analysis of interatomic Contacts of Structural Units in PDB entry:
9OCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OCJ entry

There are 3 chains in PDB entry 9OCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 133LYS 682
D
 ARG 41ILE 69
A
 ASN 171PRO 743
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9OCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
133 145Right-handed alpha
Helix 2
AA2
B
148 167Right-handed alpha
Helix 3
AA3
B
168 182Right-handed alpha
Helix 4
AA4
B
185 234Right-handed alpha
Helix 5
AA5
B
235 236Right-handed 310
Helix 6
AA6
B
237 238Right-handed 310
Helix 7
AA7
B
239 244Right-handed alpha
Helix 8
AA8
B
245 254Right-handed alpha
Helix 9
AA9
B
256 262Right-handed alpha
Helix 10
AB1
B
262 289Right-handed alpha
Helix 11
AB2
B
289 296Right-handed alpha
Helix 12
AB3
B
303 338Right-handed alpha
Helix 13
AB4
B
338 346Right-handed alpha
Helix 14
AB5
B
347 401Right-handed alpha
Helix 15
AB6
B
405 440Right-handed alpha
Helix 16
AB7
B
440 449Right-handed alpha
Helix 17
AB8
B
508 517Right-handed alpha
Helix 18
AB9
B
535 537Right-handed 310
Helix 19
AC1
B
538 545Right-handed alpha
Helix 20
AC2
B
559 565Right-handed alpha
Helix 21
AC3
B
572 583Right-handed alpha
Helix 22
AC4
B
585 590Right-handed alpha
Helix 23
AC5
B
594 598Right-handed 310
Helix 24
AC6
B
601 605Right-handed 310
Helix 25
AC7
B
608 622Right-handed alpha
Helix 26
AC8
B
638 644Right-handed alpha
Helix 27
AC9
B
664 669Right-handed 310
Helix 28
AD1
D
45 63Right-handed alpha
Helix 29
AD2
D
64 69Right-handed 310
Helix 30
AD3
A
172 178Right-handed alpha
Helix 31
AD4
A
179 182Right-handed 310
Helix 32
AD5
A
183 203Right-handed alpha
Helix 33
AD6
A
203 209Right-handed alpha
Helix 34
AD7
A
225 270Right-handed alpha
Helix 35
AD8
A
271 273Right-handed 310
Helix 36
AD9
A
274 279Right-handed alpha
Helix 37
AE1
A
280 290Right-handed alpha
Helix 38
AE2
A
290 324Right-handed alpha
Helix 39
AE3
A
324 333Right-handed alpha
Helix 40
AE4
A
334 345Right-handed alpha
Helix 41
AE5
A
345 373Right-handed alpha
Helix 42
AE6
A
373 380Right-handed alpha
Helix 43
AE7
A
382 436Right-handed alpha
Helix 44
AE8
A
440 475Right-handed alpha
Helix 45
AE9
A
475 484Right-handed alpha
Helix 46
AF1
A
543 552Right-handed alpha
Helix 47
AF2
A
570 572Right-handed 310
Helix 48
AF3
A
573 580Right-handed alpha
Helix 49
AF4
A
594 600Right-handed alpha
Helix 50
AF5
A
608 619Right-handed alpha
Helix 51
AF6
A
621 626Right-handed alpha
Helix 52
AF7
A
630 634Right-handed 310
Helix 53
AF8
A
644 658Right-handed alpha
Helix 54
AF9
A
674 687Right-handed alpha
Helix 55
AG1
A
688 694Right-handed 310
Helix 56
AG2
A
702 709Right-handed 310
Helix 57
AG3
A
725 733Right-handed alpha
Helix 58
AG4
A
734 742Right-handed alpha
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There are 4 sheets in PDB entry 9OCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 493first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 528first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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