Analysis of interatomic Contacts of Structural Units in PDB entry:
9OCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OCW entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9OCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4THR 289
A
 PRO 291LYS 353
A
 ILE 355GLU 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9OCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
27 39Right-handed alpha
Helix 3
AA3
A
43 55Right-handed alpha
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
105 113Right-handed 310
Helix 7
AA7
A
166 170Right-handed 310
Helix 8
AA8
A
183 206Right-handed alpha
Helix 9
AA9
A
259 272Right-handed alpha
Helix 10
AB1
A
306 318Right-handed alpha
Helix 11
AB2
A
321 327Right-handed alpha
Helix 12
AB3
A
335 344Right-handed alpha
Helix 13
AB4
A
382 391Right-handed alpha
Helix 14
AB5
A
402 415Right-handed alpha
Helix 15
AB6
A
428 442Right-handed alpha
Helix 16
AB7
A
444 455Right-handed alpha
Helix 17
AB8
A
476 489Right-handed alpha
Helix 18
AB9
A
490 504Right-handed alpha
Helix 19
AC1
A
514 527Right-handed alpha
Helix 20
AC2
A
544 559Right-handed alpha
Helix 21
AC3
A
566 584Right-handed alpha
Helix 22
AC4
A
586 602Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9OCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 124first strand
Strand 2
A
129 139anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
171 178anti-parallel
Strand 5
A
231 236anti-parallel
Strand 6
A
219 222anti-parallel
Strand 7
A
116 124anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
287 288parallel
Strand 3
A
282 284anti-parallel
Strand 4
A
243 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
292 295anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il