Analysis of interatomic Contacts of Structural Units in PDB entry:
9OD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OD3 entry

There are 6 chains in PDB entry 9OD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASP 25	TYR 302
2	TYR 9	PHE 270
3	GLY 1	ALA 235
4	GLY 2	LEU 68
H	GLU 1	SER 129
L	SER 2	LEU 127

There are 24 helices in PDB entry 9OD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	46	50	Right-handed 310
Helix 2	AA2	1	56	60	Right-handed 310
Helix 3	AA3	1	72	75	Right-handed 310
Helix 4	AA4	1	76	82	Right-handed alpha
Helix 5	AA5	1	116	123	Right-handed alpha
Helix 6	AA6	1	172	177	Right-handed 310
Helix 7	AA7	1	222	226	Right-handed 310
Helix 8	AA8	2	35	37	Right-handed 310
Helix 9	AA9	2	43	47	Right-handed 310
Helix 10	AB1	2	56	60	Right-handed 310
Helix 11	AB2	2	83	87	Right-handed 310
Helix 12	AB3	2	89	99	Right-handed alpha
Helix 13	AB4	2	143	148	Right-handed alpha
Helix 14	AB5	2	176	180	Right-handed 310
Helix 15	AB6	2	185	192	Right-handed 310
Helix 16	AB7	3	43	48	Right-handed alpha
Helix 17	AB8	3	64	69	Right-handed 310
Helix 18	AB9	3	98	105	Right-handed alpha
Helix 19	AC1	3	144	149	Right-handed alpha
Helix 20	AC2	4	35	39	Right-handed 310
Helix 21	AC3	4	50	55	Right-handed alpha
Helix 22	AC4	H	28	32	Right-handed 310
Helix 23	AC5	H	87	91	Right-handed 310
Helix 24	AC6	L	95	99	Right-handed 310

There are 18 sheets in PDB entry 9OD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	44	45	first strand
Strand 2	3	163	168	anti-parallel
Strand 3	3	114	120	anti-parallel
Strand 4	3	207	216	anti-parallel
Strand 5	3	51	52	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	44	45	first strand
Strand 2	3	163	168	anti-parallel
Strand 3	3	114	120	anti-parallel
Strand 4	3	207	216	anti-parallel
Strand 5	3	70	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	85	94	first strand
Strand 2	1	254	272	anti-parallel
Strand 3	1	125	142	anti-parallel
Strand 4	1	205	206	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	192	196	first strand
Strand 2	1	125	142	anti-parallel
Strand 3	1	254	272	anti-parallel
Strand 4	3	39	40	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	105	109	first strand
Strand 2	1	240	245	anti-parallel
Strand 3	1	154	160	anti-parallel
Strand 4	1	182	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	14	18	first strand
Strand 2	2	21	25	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	31	33	first strand
Strand 2	2	204	209	parallel
Strand 3	2	102	111	anti-parallel
Strand 4	2	246	259	anti-parallel
Strand 5	2	64	65	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	31	33	first strand
Strand 2	2	204	209	parallel
Strand 3	2	102	111	anti-parallel
Strand 4	2	246	259	anti-parallel
Strand 5	2	69	71	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	154	155	first strand
Strand 2	2	78	82	anti-parallel
Strand 3	2	226	237	anti-parallel
Strand 4	2	119	128	anti-parallel
Strand 5	2	194	198	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	83	86	first strand
Strand 2	3	189	199	anti-parallel
Strand 3	3	127	135	anti-parallel
Strand 4	3	152	157	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	177	178	first strand
Strand 2	3	109	111	anti-parallel
Strand 3	3	221	222	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	4	7	first strand
Strand 2	4	26	29	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	123	127	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	123	127	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	116	119	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	101	108	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	54	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	101	108	anti-parallel
Strand 4	L	115	118	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	86	91	anti-parallel
Strand 3	L	76	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OD3