Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODE entry

There are 4 chains in PDB entry 9ODE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	ASN 340
C	ILE 9	PHE 61
D	THR 67	ARG 345
A	ALA 7	PHE 354

There are 25 helices in PDB entry 9ODE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	B	128	132	Right-handed 310
Helix 4	AA4	C	10	22	Right-handed alpha
Helix 5	AA5	C	29	44	Right-handed alpha
Helix 6	AA6	D	68	95	Right-handed alpha
Helix 7	AA7	D	101	118	Right-handed alpha
Helix 8	AA8	D	120	131	Right-handed alpha
Helix 9	AA9	D	136	171	Right-handed alpha
Helix 10	AB1	D	171	179	Right-handed alpha
Helix 11	AB2	D	180	195	Right-handed alpha
Helix 12	AB3	D	195	203	Right-handed alpha
Helix 13	AB4	D	228	241	Right-handed alpha
Helix 14	AB5	D	241	260	Right-handed alpha
Helix 15	AB6	D	268	306	Right-handed alpha
Helix 16	AB7	D	311	336	Right-handed alpha
Helix 17	AB8	A	8	32	Right-handed alpha
Helix 18	AB9	A	45	53	Right-handed alpha
Helix 19	AC1	A	207	216	Right-handed 310
Helix 20	AC2	A	228	230	Right-handed 310
Helix 21	AC3	A	242	255	Right-handed alpha
Helix 22	AC4	A	270	281	Right-handed alpha
Helix 23	AC5	A	282	286	Right-handed 310
Helix 24	AC6	A	295	308	Right-handed alpha
Helix 25	AC7	A	330	352	Right-handed alpha

There are 8 sheets in PDB entry 9ODE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODE