Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODF entry

There are 4 chains in PDB entry 9ODF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	ASN 340
C	ILE 9	PHE 61
D	MET 65	ARG 345
A	GLU 8	PHE 354

There are 27 helices in PDB entry 9ODF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	C	10	22	Right-handed alpha
Helix 4	AA4	C	29	43	Right-handed alpha
Helix 5	AA5	C	44	48	Right-handed 310
Helix 6	AA6	D	66	96	Right-handed alpha
Helix 7	AA7	D	101	119	Right-handed alpha
Helix 8	AA8	D	120	130	Right-handed alpha
Helix 9	AA9	D	137	171	Right-handed alpha
Helix 10	AB1	D	174	179	Right-handed alpha
Helix 11	AB2	D	180	195	Right-handed alpha
Helix 12	AB3	D	195	205	Right-handed alpha
Helix 13	AB4	D	225	241	Right-handed alpha
Helix 14	AB5	D	241	259	Right-handed alpha
Helix 15	AB6	D	260	266	Right-handed 310
Helix 16	AB7	D	268	280	Right-handed alpha
Helix 17	AB8	D	283	306	Right-handed alpha
Helix 18	AB9	D	311	337	Right-handed alpha
Helix 19	AC1	A	9	31	Right-handed alpha
Helix 20	AC2	A	45	51	Right-handed alpha
Helix 21	AC3	A	207	216	Right-handed 310
Helix 22	AC4	A	228	230	Right-handed 310
Helix 23	AC5	A	242	255	Right-handed alpha
Helix 24	AC6	A	270	278	Right-handed alpha
Helix 25	AC7	A	282	286	Right-handed 310
Helix 26	AC8	A	295	309	Right-handed alpha
Helix 27	AC9	A	330	351	Right-handed alpha

There are 9 sheets in PDB entry 9ODF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	209	first strand
Strand 2	D	216	219	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	33	40	parallel
Strand 5	A	220	226	parallel
Strand 6	A	263	269	parallel
Strand 7	A	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODF