Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODG entry

There are 4 chains in PDB entry 9ODG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	CYS 351
B	ASP 5	ASN 340
C	ILE 9	PHE 61
R	MET 65	PHE 343

There are 30 helices in PDB entry 9ODG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	31	Right-handed alpha
Helix 2	AA2	A	45	56	Right-handed alpha
Helix 3	AA3	A	70	88	Right-handed alpha
Helix 4	AA4	A	100	111	Right-handed alpha
Helix 5	AA5	A	120	133	Right-handed alpha
Helix 6	AA6	A	138	143	Right-handed alpha
Helix 7	AA7	A	150	158	Right-handed alpha
Helix 8	AA8	A	158	163	Right-handed alpha
Helix 9	AA9	A	170	176	Right-handed alpha
Helix 10	AB1	A	208	213	Right-handed alpha
Helix 11	AB2	A	214	216	Right-handed 310
Helix 12	AB3	A	241	253	Right-handed alpha
Helix 13	AB4	A	271	279	Right-handed alpha
Helix 14	AB5	A	282	286	Right-handed 310
Helix 15	AB6	A	295	311	Right-handed alpha
Helix 16	AB7	A	330	351	Right-handed alpha
Helix 17	AB8	B	6	25	Right-handed alpha
Helix 18	AB9	B	29	33	Right-handed 310
Helix 19	AC1	C	10	24	Right-handed alpha
Helix 20	AC2	C	29	45	Right-handed alpha
Helix 21	AC3	C	46	48	Right-handed 310
Helix 22	AC4	R	66	97	Right-handed alpha
Helix 23	AC5	R	101	130	Right-handed alpha
Helix 24	AC6	R	136	171	Right-handed alpha
Helix 25	AC7	R	171	179	Right-handed alpha
Helix 26	AC8	R	180	205	Right-handed alpha
Helix 27	AC9	R	224	241	Right-handed alpha
Helix 28	AD1	R	242	260	Right-handed alpha
Helix 29	AD2	R	268	306	Right-handed alpha
Helix 30	AD3	R	313	339	Right-handed alpha

There are 10 sheets in PDB entry 9ODG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	222	parallel
Strand 5	A	263	265	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	268	269	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	338	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODG