Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ODH entry

There are 3 chains in PDB entry 9ODH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 5ASN 340
C
 ILE 9PHE 61
A
 GLU 8LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9ODH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 25Right-handed alpha
Helix 2
AA2
B
29 34Right-handed alpha
Helix 3
AA3
C
10 25Right-handed alpha
Helix 4
AA4
C
29 44Right-handed alpha
Helix 5
AA5
C
45 48Right-handed 310
Helix 6
AA6
A
9 30Right-handed alpha
Helix 7
AA7
A
45 57Right-handed alpha
Helix 8
AA8
A
64 68Right-handed 310
Helix 9
AA9
A
69 86Right-handed alpha
Helix 10
AB1
A
101 110Right-handed alpha
Helix 11
AB2
A
122 133Right-handed alpha
Helix 12
AB3
A
133 142Right-handed alpha
Helix 13
AB4
A
152 157Right-handed alpha
Helix 14
AB5
A
158 163Right-handed alpha
Helix 15
AB6
A
170 176Right-handed alpha
Helix 16
AB7
A
242 255Right-handed alpha
Helix 17
AB8
A
256 260Right-handed 310
Helix 18
AB9
A
270 276Right-handed alpha
Helix 19
AC1
A
295 309Right-handed alpha
Helix 20
AC2
A
328 348Right-handed alpha
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There are 8 sheets in PDB entry 9ODH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
329 331anti-parallel
Strand 4
B
315 317anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
111 115anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
135 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
175 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
218 223anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
33 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
321 323parallel
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