Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODI entry

There are 3 chains in PDB entry 9ODI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	ASN 340
C	ILE 9	PHE 61
A	ALA 7	LYS 349

There are 19 helices in PDB entry 9ODI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	B	300	302	Right-handed 310
Helix 4	AA4	C	10	24	Right-handed alpha
Helix 5	AA5	C	29	44	Right-handed alpha
Helix 6	AA6	C	55	59	Right-handed 310
Helix 7	AA7	A	8	28	Right-handed alpha
Helix 8	AA8	A	46	57	Right-handed alpha
Helix 9	AA9	A	64	86	Right-handed alpha
Helix 10	AB1	A	100	110	Right-handed alpha
Helix 11	AB2	A	121	132	Right-handed alpha
Helix 12	AB3	A	133	141	Right-handed alpha
Helix 13	AB4	A	152	163	Right-handed alpha
Helix 14	AB5	A	170	176	Right-handed alpha
Helix 15	AB6	A	207	211	Right-handed 310
Helix 16	AB7	A	242	255	Right-handed alpha
Helix 17	AB8	A	270	278	Right-handed alpha
Helix 18	AB9	A	295	309	Right-handed alpha
Helix 19	AC1	A	329	348	Right-handed alpha

There are 10 sheets in PDB entry 9ODI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	167	170	anti-parallel
Strand 4	B	176	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	336	339	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	190	191	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	33	37	parallel
Strand 4	A	220	221	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	265	269	parallel
Strand 3	A	320	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODI