Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODJ entry

There are 4 chains in PDB entry 9ODJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	ASN 340
C	ILE 9	PHE 61
D	THR 67	ARG 345
A	LEU 5	PHE 354

There are 34 helices in PDB entry 9ODJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	22	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	C	10	21	Right-handed alpha
Helix 4	AA4	C	29	44	Right-handed alpha
Helix 5	AA5	C	55	59	Right-handed 310
Helix 6	AA6	D	68	94	Right-handed alpha
Helix 7	AA7	D	101	118	Right-handed alpha
Helix 8	AA8	D	120	131	Right-handed alpha
Helix 9	AA9	D	148	157	Right-handed alpha
Helix 10	AB1	D	162	171	Right-handed alpha
Helix 11	AB2	D	174	179	Right-handed alpha
Helix 12	AB3	D	180	195	Right-handed alpha
Helix 13	AB4	D	195	204	Right-handed alpha
Helix 14	AB5	D	224	241	Right-handed alpha
Helix 15	AB6	D	241	259	Right-handed alpha
Helix 16	AB7	D	268	303	Right-handed alpha
Helix 17	AB8	D	311	337	Right-handed alpha
Helix 18	AB9	A	9	31	Right-handed alpha
Helix 19	AC1	A	45	52	Right-handed alpha
Helix 20	AC2	A	69	91	Right-handed alpha
Helix 21	AC3	A	97	111	Right-handed alpha
Helix 22	AC4	A	112	114	Right-handed 310
Helix 23	AC5	A	120	133	Right-handed alpha
Helix 24	AC6	A	133	142	Right-handed alpha
Helix 25	AC7	A	143	146	Right-handed 310
Helix 26	AC8	A	151	158	Right-handed alpha
Helix 27	AC9	A	158	163	Right-handed alpha
Helix 28	AD1	A	170	178	Right-handed alpha
Helix 29	AD2	A	207	216	Right-handed 310
Helix 30	AD3	A	241	255	Right-handed alpha
Helix 31	AD4	A	270	278	Right-handed alpha
Helix 32	AD5	A	282	286	Right-handed 310
Helix 33	AD6	A	295	309	Right-handed alpha
Helix 34	AD7	A	331	351	Right-handed alpha

There are 9 sheets in PDB entry 9ODJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	211	first strand
Strand 2	D	214	219	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODJ