Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODK entry

There are 4 chains in PDB entry 9ODK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	LYS 349
B	SER 2	ASN 340
G	SER 8	PHE 61
R	SER 76	ILE 352

There are 31 helices in PDB entry 9ODK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	31	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	62	69	Right-handed alpha
Helix 4	AA4	A	69	91	Right-handed alpha
Helix 5	AA5	A	97	111	Right-handed alpha
Helix 6	AA6	A	120	133	Right-handed alpha
Helix 7	AA7	A	133	142	Right-handed alpha
Helix 8	AA8	A	152	158	Right-handed alpha
Helix 9	AA9	A	158	163	Right-handed alpha
Helix 10	AB1	A	170	174	Right-handed 310
Helix 11	AB2	A	207	215	Right-handed 310
Helix 12	AB3	A	241	255	Right-handed alpha
Helix 13	AB4	A	270	279	Right-handed alpha
Helix 14	AB5	A	282	286	Right-handed 310
Helix 15	AB6	A	295	309	Right-handed alpha
Helix 16	AB7	A	328	349	Right-handed alpha
Helix 17	AB8	B	3	26	Right-handed alpha
Helix 18	AB9	B	29	34	Right-handed alpha
Helix 19	AC1	G	9	24	Right-handed alpha
Helix 20	AC2	G	29	44	Right-handed alpha
Helix 21	AC3	R	77	96	Right-handed alpha
Helix 22	AC4	R	97	100	Right-handed 310
Helix 23	AC5	R	101	131	Right-handed alpha
Helix 24	AC6	R	136	171	Right-handed alpha
Helix 25	AC7	R	172	175	Right-handed 310
Helix 26	AC8	R	180	205	Right-handed alpha
Helix 27	AC9	R	226	242	Right-handed alpha
Helix 28	AD1	R	242	260	Right-handed alpha
Helix 29	AD2	R	274	304	Right-handed alpha
Helix 30	AD3	R	311	335	Right-handed alpha
Helix 31	AD4	R	341	352	Right-handed alpha

There are 11 sheets in PDB entry 9ODK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	190	191	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	37	parallel
Strand 4	A	220	221	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	265	269	parallel
Strand 3	A	320	323	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	167	168	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	199	202	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	296	298	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	206	207	first strand
Strand 2	R	218	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODK