Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ODL entry

There are 4 chains in PDB entry 9ODL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	ASN 340
G	ILE 9	PHE 61
A	SER 6	CYS 351
R	MET 65	CYS 351

There are 32 helices in PDB entry 9ODL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	26	Right-handed alpha
Helix 2	AA2	B	29	35	Right-handed alpha
Helix 3	AA3	G	10	24	Right-handed alpha
Helix 4	AA4	G	29	45	Right-handed alpha
Helix 5	AA5	G	46	48	Right-handed 310
Helix 6	AA6	A	7	31	Right-handed alpha
Helix 7	AA7	A	47	57	Right-handed alpha
Helix 8	AA8	A	62	91	Right-handed alpha
Helix 9	AA9	A	97	111	Right-handed alpha
Helix 10	AB1	A	120	133	Right-handed alpha
Helix 11	AB2	A	133	142	Right-handed alpha
Helix 12	AB3	A	151	158	Right-handed alpha
Helix 13	AB4	A	158	164	Right-handed alpha
Helix 14	AB5	A	171	176	Right-handed alpha
Helix 15	AB6	A	204	208	Right-handed 310
Helix 16	AB7	A	209	215	Right-handed 310
Helix 17	AB8	A	241	255	Right-handed alpha
Helix 18	AB9	A	256	260	Right-handed 310
Helix 19	AC1	A	270	278	Right-handed alpha
Helix 20	AC2	A	282	286	Right-handed 310
Helix 21	AC3	A	295	310	Right-handed alpha
Helix 22	AC4	A	328	350	Right-handed alpha
Helix 23	AC5	R	66	96	Right-handed alpha
Helix 24	AC6	R	101	131	Right-handed alpha
Helix 25	AC7	R	136	171	Right-handed alpha
Helix 26	AC8	R	174	179	Right-handed alpha
Helix 27	AC9	R	180	205	Right-handed alpha
Helix 28	AD1	R	228	242	Right-handed alpha
Helix 29	AD2	R	242	260	Right-handed alpha
Helix 30	AD3	R	269	307	Right-handed alpha
Helix 31	AD4	R	311	338	Right-handed alpha
Helix 32	AD5	R	340	351	Right-handed alpha

There are 10 sheets in PDB entry 9ODL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	169	170	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	195	200	parallel
Strand 3	A	185	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	220	226	parallel
Strand 3	A	263	269	parallel
Strand 4	A	322	323	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	206	207	first strand
Strand 2	R	218	219	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ODL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODL