Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ODO entry

There are 3 chains in PDB entry 9ODO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8LYS 349
B
 GLU 3ASN 340
G
 ALA 10PHE 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9ODO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 30Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
62 91Right-handed alpha
Helix 4
AA4
A
97 111Right-handed alpha
Helix 5
AA5
A
120 133Right-handed alpha
Helix 6
AA6
A
133 142Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
158 163Right-handed alpha
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
207 215Right-handed 310
Helix 11
AB2
A
241 255Right-handed alpha
Helix 12
AB3
A
270 279Right-handed alpha
Helix 13
AB4
A
282 286Right-handed 310
Helix 14
AB5
A
295 309Right-handed alpha
Helix 15
AB6
A
328 349Right-handed alpha
Helix 16
AB7
B
4 26Right-handed alpha
Helix 17
AB8
B
29 34Right-handed alpha
Helix 18
AB9
G
11 24Right-handed alpha
Helix 19
AC1
G
29 44Right-handed alpha
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There are 9 sheets in PDB entry 9ODO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
194 200parallel
Strand 3
A
185 191anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
266 269parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 317anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
78 81anti-parallel
Strand 4
B
91 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
111 113anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
134 140anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
169 170anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
220 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
297 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il