Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ODP entry

There are 3 chains in PDB entry 9ODP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ASN 346
B
 ASP 5ASN 340
G
 ILE 9PHE 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9ODP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 31Right-handed alpha
Helix 2
AA2
A
45 58Right-handed alpha
Helix 3
AA3
A
62 91Right-handed alpha
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
120 133Right-handed alpha
Helix 6
AA6
A
133 142Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
158 163Right-handed alpha
Helix 9
AA9
A
170 176Right-handed alpha
Helix 10
AB1
A
210 215Right-handed 310
Helix 11
AB2
A
241 255Right-handed alpha
Helix 12
AB3
A
257 262Right-handed 310
Helix 13
AB4
A
270 279Right-handed alpha
Helix 14
AB5
A
295 310Right-handed alpha
Helix 15
AB6
A
328 346Right-handed alpha
Helix 16
AB7
B
6 26Right-handed alpha
Helix 17
AB8
B
29 35Right-handed alpha
Helix 18
AB9
G
10 24Right-handed alpha
Helix 19
AC1
G
29 45Right-handed alpha
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There are 8 sheets in PDB entry 9ODP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
34 39parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
320 323parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
135 140anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
176 178anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
295 298anti-parallel
Strand 4
B
303 307anti-parallel
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