Analysis of interatomic Contacts of Structural Units in PDB entry:
9ODY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ODY entry

There is 1 chain in PDB entry 9ODY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 36SER 1274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9ODY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
49 80Right-handed alpha
Helix 3
AA3
A
115 161Right-handed alpha
Helix 4
AA4
A
164 171Right-handed alpha
Helix 5
AA5
A
172 192Right-handed alpha
Helix 6
AA6
A
192 216Right-handed alpha
Helix 7
AA7
A
216 232Right-handed alpha
Helix 8
AA8
A
238 244Right-handed alpha
Helix 9
AA9
A
252 265Right-handed alpha
Helix 10
AB1
A
265 272Right-handed alpha
Helix 11
AB2
A
274 322Right-handed alpha
Helix 12
AB3
A
322 327Right-handed alpha
Helix 13
AB4
A
332 375Right-handed alpha
Helix 14
AB5
A
406 410Right-handed 310
Helix 15
AB6
A
437 446Right-handed alpha
Helix 16
AB7
A
467 472Right-handed alpha
Helix 17
AB8
A
489 497Right-handed alpha
Helix 18
AB9
A
501 512Right-handed alpha
Helix 19
AC1
A
514 520Right-handed alpha
Helix 20
AC2
A
537 552Right-handed alpha
Helix 21
AC3
A
567 582Right-handed alpha
Helix 22
AC4
A
593 598Right-handed alpha
Helix 23
AC5
A
616 624Right-handed alpha
Helix 24
AC6
A
625 638Right-handed alpha
Helix 25
AC7
A
695 703Right-handed alpha
Helix 26
AC8
A
706 737Right-handed alpha
Helix 27
AC9
A
738 740Right-handed 310
Helix 28
AD1
A
742 790Right-handed alpha
Helix 29
AD2
A
798 804Right-handed alpha
Helix 30
AD3
A
805 807Right-handed 310
Helix 31
AD4
A
808 818Right-handed alpha
Helix 32
AD5
A
818 823Right-handed alpha
Helix 33
AD6
A
823 828Right-handed alpha
Helix 34
AD7
A
828 852Right-handed alpha
Helix 35
AD8
A
852 901Right-handed alpha
Helix 36
AD9
A
901 909Right-handed alpha
Helix 37
AE1
A
912 922Right-handed alpha
Helix 38
AE2
A
922 964Right-handed alpha
Helix 39
AE3
A
968 993Right-handed alpha
Helix 40
AE4
A
995 1011Right-handed alpha
Helix 41
AE5
A
1075 1080Right-handed alpha
Helix 42
AE6
A
1098 1102Right-handed 310
Helix 43
AE7
A
1103 1110Right-handed alpha
Helix 44
AE8
A
1124 1131Right-handed alpha
Helix 45
AE9
A
1139 1150Right-handed alpha
Helix 46
AF1
A
1152 1159Right-handed alpha
Helix 47
AF2
A
1175 1190Right-handed alpha
Helix 48
AF3
A
1206 1220Right-handed alpha
Helix 49
AF4
A
1231 1237Right-handed alpha
Helix 50
AF5
A
1254 1260Right-handed alpha
Helix 51
AF6
A
1262 1274Right-handed alpha
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There are 6 sheets in PDB entry 9ODY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 403first strand
Strand 2
A
453 458anti-parallel
Strand 3
A
461 462anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
556 560parallel
Strand 3
A
586 590parallel
Strand 4
A
427 432parallel
Strand 5
A
603 606parallel
Strand 6
A
611 615anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
528 529anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1051 1054first strand
Strand 2
A
1036 1040anti-parallel
Strand 3
A
1089 1091anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1066first strand
Strand 2
A
1224 1228parallel
Strand 3
A
1194 1198parallel
Strand 4
A
1112 1114parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1242 1244first strand
Strand 2
A
1249 1252anti-parallel
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