Analysis of interatomic Contacts of Structural Units in PDB entry:
9OEF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OEF entry

There are 6 chains in PDB entry 9OEF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 407	PRO 680
H	VAL 2	GLN 105
L	ILE 2	THR 102
A	GLY 407	PRO 680
J	VAL 2	GLN 105
K	ILE 2	THR 102

There are 6 helices in PDB entry 9OEF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	658	664	Right-handed alpha
Helix 2	AA2	H	28	32	Right-handed 310
Helix 3	AA3	H	41	43	Right-handed 310
Helix 4	AA4	A	658	664	Right-handed alpha
Helix 5	AA5	J	28	32	Right-handed 310
Helix 6	AA6	J	41	43	Right-handed 310

There are 16 sheets in PDB entry 9OEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	476	first strand
Strand 2	C	464	468	anti-parallel
Strand 3	C	512	516	anti-parallel
Strand 4	C	521	536	anti-parallel
Strand 5	C	548	557	anti-parallel
Strand 6	C	619	627	anti-parallel
Strand 7	C	478	482	anti-parallel
Strand 8	C	419	427	anti-parallel
Strand 9	C	488	493	anti-parallel
Strand 10	C	496	501	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	476	first strand
Strand 2	C	464	468	anti-parallel
Strand 3	C	512	516	anti-parallel
Strand 4	C	521	536	anti-parallel
Strand 5	C	548	557	anti-parallel
Strand 6	C	619	627	anti-parallel
Strand 7	C	478	482	anti-parallel
Strand 8	C	419	427	anti-parallel
Strand 9	C	670	677	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	432	first strand
Strand 2	C	606	610	anti-parallel
Strand 3	C	566	568	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	570	578	anti-parallel
Strand 3	C	584	598	anti-parallel
Strand 4	A	584	598	parallel
Strand 5	A	570	578	anti-parallel
Strand 6	A	445	446	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	647	first strand
Strand 2	C	584	598	anti-parallel
Strand 3	A	584	598	parallel
Strand 4	A	646	647	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	58	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	90	94	anti-parallel
Strand 5	H	102	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	63	67	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	34	37	anti-parallel
Strand 4	L	86	89	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	476	first strand
Strand 2	A	464	468	anti-parallel
Strand 3	A	512	516	anti-parallel
Strand 4	A	521	536	anti-parallel
Strand 5	A	548	557	anti-parallel
Strand 6	A	619	627	anti-parallel
Strand 7	A	478	482	anti-parallel
Strand 8	A	419	427	anti-parallel
Strand 9	A	488	493	anti-parallel
Strand 10	A	496	501	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	476	first strand
Strand 2	A	464	468	anti-parallel
Strand 3	A	512	516	anti-parallel
Strand 4	A	521	536	anti-parallel
Strand 5	A	548	557	anti-parallel
Strand 6	A	619	627	anti-parallel
Strand 7	A	478	482	anti-parallel
Strand 8	A	419	427	anti-parallel
Strand 9	A	670	677	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	432	first strand
Strand 2	A	606	610	anti-parallel
Strand 3	A	566	568	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	5	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	58	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	90	94	anti-parallel
Strand 5	J	102	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	63	67	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	45	49	anti-parallel
Strand 3	K	34	37	anti-parallel
Strand 4	K	86	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OEF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OEF